Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
PRKDCP78527 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC11.22□□□□□ -0.61
PRKDCP78527 LYPLA2P1-203ENST00000447689 696 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 HNRNPA1P42-201ENST00000458678 957 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11.22□□□□□ -0.61
PRKDCP78527 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC11.22□□□□□ -0.61
PRKDCP78527 MIR4522-201ENST00000584932 87 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 AL627230.2-201ENST00000613254 655 ntBASIC11.22□□□□□ -0.61
PRKDCP78527 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
PRKDCP78527 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC11.22□□□□□ -0.61
PRKDCP78527 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC11.22□□□□□ -0.61
PRKDCP78527 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
PRKDCP78527 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
PRKDCP78527 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC11.21□□□□□ -0.61
PRKDCP78527 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
PRKDCP78527 BX323043.1-201ENST00000641006 1765 ntBASIC11.21□□□□□ -0.61
PRKDCP78527 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 HPGD-203ENST00000422112 805 ntTSL 2 BASIC11.21□□□□□ -0.61
PRKDCP78527 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 FAM8A4P-201ENST00000435433 1213 ntBASIC11.21□□□□□ -0.61
PRKDCP78527 PFN2-206ENST00000461930 606 ntTSL 4 BASIC11.21□□□□□ -0.61
PRKDCP78527 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC11.21□□□□□ -0.61
PRKDCP78527 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC11.21□□□□□ -0.61
PRKDCP78527 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC11.21□□□□□ -0.61
PRKDCP78527 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC11.21□□□□□ -0.61
PRKDCP78527 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
PRKDCP78527 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
PRKDCP78527 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC11.21□□□□□ -0.61
PRKDCP78527 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC11.21□□□□□ -0.61
PRKDCP78527 MIR557-201ENST00000385239 98 ntBASIC11.21□□□□□ -0.61
PRKDCP78527 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC11.21□□□□□ -0.61
PRKDCP78527 AC053503.3-201ENST00000448375 114 ntBASIC11.21□□□□□ -0.61
PRKDCP78527 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
PRKDCP78527 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC11.21□□□□□ -0.61
PRKDCP78527 AC097359.3-201ENST00000603982 1210 ntBASIC11.21□□□□□ -0.61
PRKDCP78527 AC012073.1-201ENST00000606114 1108 ntBASIC11.21□□□□□ -0.61
PRKDCP78527 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
PRKDCP78527 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
PRKDCP78527 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC11.21□□□□□ -0.62
PRKDCP78527 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
PRKDCP78527 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
PRKDCP78527 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC11.21□□□□□ -0.62
PRKDCP78527 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC11.21□□□□□ -0.62
PRKDCP78527 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
PRKDCP78527 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC11.21□□□□□ -0.62
PRKDCP78527 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC11.21□□□□□ -0.62
PRKDCP78527 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC11.21□□□□□ -0.62
PRKDCP78527 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC11.21□□□□□ -0.62
PRKDCP78527 SNORD3B-2-202ENST00000571722 791 ntBASIC11.21□□□□□ -0.62
PRKDCP78527 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC11.21□□□□□ -0.62
PRKDCP78527 AC009955.4-201ENST00000597192 544 ntBASIC11.21□□□□□ -0.62
PRKDCP78527 MVK-214ENST00000629016 1591 ntTSL 5 BASIC11.21□□□□□ -0.62
PRKDCP78527 ENPP7P8-202ENST00000527856 1345 ntBASIC11.21□□□□□ -0.62
PRKDCP78527 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
PRKDCP78527 AC016396.2-201ENST00000562575 1417 ntBASIC11.21□□□□□ -0.62
PRKDCP78527 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.62
PRKDCP78527 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
PRKDCP78527 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
PRKDCP78527 HNRNPA1P41-201ENST00000397777 928 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 HCG27-204ENST00000424675 895 ntTSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC11.2□□□□□ -0.62
PRKDCP78527 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 AL592424.1-201ENST00000563624 1536 ntBASIC11.2□□□□□ -0.62
PRKDCP78527 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC11.2□□□□□ -0.62
PRKDCP78527 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
PRKDCP78527 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
PRKDCP78527 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC11.2□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms