Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MSX2P35548 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.34■□□□□ 0.05
MSX2P35548 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
MSX2P35548 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MSX2P35548 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
MSX2P35548 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.33■□□□□ 0.05
MSX2P35548 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
MSX2P35548 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MSX2P35548 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
MSX2P35548 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
MSX2P35548 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
MSX2P35548 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 PCDHA3-202ENST00000532566 4594 ntBASIC15.33■□□□□ 0.04
MSX2P35548 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
MSX2P35548 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.33■□□□□ 0.04
MSX2P35548 RCN1P1-201ENST00000400413 996 ntBASIC15.33■□□□□ 0.04
MSX2P35548 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.33■□□□□ 0.04
MSX2P35548 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.33■□□□□ 0.04
MSX2P35548 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.33■□□□□ 0.04
MSX2P35548 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.33■□□□□ 0.04
MSX2P35548 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
MSX2P35548 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.33■□□□□ 0.04
MSX2P35548 MTDHP3-201ENST00000594186 672 ntBASIC15.33■□□□□ 0.04
MSX2P35548 MTDHP4-201ENST00000600287 670 ntBASIC15.33■□□□□ 0.04
MSX2P35548 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
MSX2P35548 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.33■□□□□ 0.04
MSX2P35548 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.33■□□□□ 0.04
MSX2P35548 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.33■□□□□ 0.04
MSX2P35548 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.33■□□□□ 0.04
MSX2P35548 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
MSX2P35548 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
MSX2P35548 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
MSX2P35548 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.32■□□□□ 0.04
MSX2P35548 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 PCED1CP-201ENST00000419887 785 ntBASIC15.32■□□□□ 0.04
MSX2P35548 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSX2P35548 SART3-203ENST00000546611 1184 ntBASIC15.32■□□□□ 0.04
MSX2P35548 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MSX2P35548 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.32■□□□□ 0.04
MSX2P35548 AL732292.2-201ENST00000609649 430 ntBASIC15.32■□□□□ 0.04
MSX2P35548 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.32■□□□□ 0.04
MSX2P35548 GGTLC5P-201ENST00000617623 998 ntBASIC15.32■□□□□ 0.04
MSX2P35548 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.32■□□□□ 0.04
MSX2P35548 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms