Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 HAUS4P1-201ENST00000406739 1145 ntBASIC16.15■□□□□ 0.18
VIMP08670 AK4P3-201ENST00000418260 669 ntBASIC16.15■□□□□ 0.18
VIMP08670 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 AC096582.2-201ENST00000510860 516 ntBASIC16.15■□□□□ 0.18
VIMP08670 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.15■□□□□ 0.18
VIMP08670 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VIMP08670 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.15■□□□□ 0.18
VIMP08670 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VIMP08670 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.15■□□□□ 0.18
VIMP08670 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VIMP08670 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.18
VIMP08670 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
VIMP08670 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC16.14■□□□□ 0.17
VIMP08670 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.14■□□□□ 0.17
VIMP08670 AC087386.2-201ENST00000623212 4637 ntBASIC16.14■□□□□ 0.17
VIMP08670 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.14■□□□□ 0.17
VIMP08670 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 RCN1P2-201ENST00000398357 915 ntBASIC16.14■□□□□ 0.17
VIMP08670 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.14■□□□□ 0.17
VIMP08670 PAWRP1-201ENST00000451083 565 ntBASIC16.14■□□□□ 0.17
VIMP08670 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.14■□□□□ 0.17
VIMP08670 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
VIMP08670 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.14■□□□□ 0.17
VIMP08670 AC011498.5-201ENST00000592027 486 ntBASIC16.14■□□□□ 0.17
VIMP08670 AC083849.1-201ENST00000615227 514 ntBASIC16.14■□□□□ 0.17
VIMP08670 AP001350.2-201ENST00000625104 1094 ntBASIC16.14■□□□□ 0.17
VIMP08670 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC16.14■□□□□ 0.17
VIMP08670 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
VIMP08670 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VIMP08670 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
VIMP08670 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.14■□□□□ 0.17
VIMP08670 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
VIMP08670 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VIMP08670 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VIMP08670 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.13■□□□□ 0.17
VIMP08670 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VIMP08670 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VIMP08670 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VIMP08670 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms