Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.98■□□□□ 0.63
COL1A1P02452 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.98■□□□□ 0.63
COL1A1P02452 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.98■□□□□ 0.63
COL1A1P02452 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.98■□□□□ 0.63
COL1A1P02452 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL1A1P02452 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL1A1P02452 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
COL1A1P02452 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 AL133267.1-201ENST00000398220 340 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.97■□□□□ 0.63
COL1A1P02452 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
COL1A1P02452 RPL7P3-201ENST00000441388 714 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 GAPDHP40-201ENST00000505218 1006 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18.97■□□□□ 0.63
COL1A1P02452 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 RN7SL219P-201ENST00000582872 296 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC18.97■□□□□ 0.63
COL1A1P02452 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL1A1P02452 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 LINC02199-201ENST00000506655 2702 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
COL1A1P02452 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.97■□□□□ 0.63
COL1A1P02452 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.97■□□□□ 0.63
COL1A1P02452 RPL28-203ENST00000428193 573 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 CSF2RBP1-201ENST00000447905 391 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.97■□□□□ 0.63
COL1A1P02452 AP001889.1-201ENST00000525414 633 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 USB1-203ENST00000539737 1212 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 PTP4A1P2-201ENST00000546033 454 ntBASIC18.97■□□□□ 0.63
COL1A1P02452 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.97■□□□□ 0.63
COL1A1P02452 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL1A1P02452 AC084018.2-201ENST00000613093 2607 ntBASIC18.96■□□□□ 0.63
COL1A1P02452 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.96■□□□□ 0.63
COL1A1P02452 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
COL1A1P02452 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.96■□□□□ 0.63
COL1A1P02452 RPL13AP25-201ENST00000484130 612 ntBASIC18.96■□□□□ 0.63
COL1A1P02452 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL1A1P02452 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.96■□□□□ 0.63
COL1A1P02452 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.96■□□□□ 0.63
COL1A1P02452 AP000812.2-201ENST00000538934 718 ntBASIC18.96■□□□□ 0.63
COL1A1P02452 ENPP7P5-201ENST00000541031 1031 ntBASIC18.96■□□□□ 0.63
COL1A1P02452 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.96■□□□□ 0.63
COL1A1P02452 DERL2-202ENST00000570848 657 ntTSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.96■□□□□ 0.63
COL1A1P02452 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.96■□□□□ 0.63
COL1A1P02452 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.96■□□□□ 0.63
COL1A1P02452 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL1A1P02452 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
COL1A1P02452 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.95■□□□□ 0.62
COL1A1P02452 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL1A1P02452 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL1A1P02452 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL1A1P02452 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.95■□□□□ 0.62
COL1A1P02452 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms