Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 DUX4L26-201ENST00000489078 1255 ntBASIC12.11□□□□□ -0.47
HLA-DQA1P01909 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 AL049597.2-201ENST00000565575 961 ntBASIC12.11□□□□□ -0.47
HLA-DQA1P01909 AD001527.2-201ENST00000622994 785 ntBASIC12.11□□□□□ -0.47
HLA-DQA1P01909 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 AC079781.5-202ENST00000641784 3743 ntBASIC12.11□□□□□ -0.47
HLA-DQA1P01909 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DQA1P01909 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 C1R-201ENST00000535233 2211 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DQA1P01909 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms