Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.15■□□□□ 0.18
TRIM38O00635 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM38O00635 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.15■□□□□ 0.18
TRIM38O00635 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM38O00635 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM38O00635 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM38O00635 PRYP6-201ENST00000514804 343 ntBASIC16.15■□□□□ 0.18
TRIM38O00635 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM38O00635 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.15■□□□□ 0.18
TRIM38O00635 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
TRIM38O00635 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM38O00635 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRIM38O00635 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.15■□□□□ 0.18
TRIM38O00635 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
TRIM38O00635 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRIM38O00635 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.15■□□□□ 0.18
TRIM38O00635 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
TRIM38O00635 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRIM38O00635 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.14■□□□□ 0.18
TRIM38O00635 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.14■□□□□ 0.18
TRIM38O00635 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
TRIM38O00635 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 AC022144.1-201ENST00000602255 1580 ntBASIC16.14■□□□□ 0.17
TRIM38O00635 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM38O00635 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM38O00635 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRIM38O00635 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 PIN1P1-201ENST00000412108 996 ntBASIC16.14■□□□□ 0.17
TRIM38O00635 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.14■□□□□ 0.17
TRIM38O00635 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC16.14■□□□□ 0.17
TRIM38O00635 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.14■□□□□ 0.17
TRIM38O00635 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
TRIM38O00635 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.14■□□□□ 0.17
TRIM38O00635 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.14■□□□□ 0.17
TRIM38O00635 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.14■□□□□ 0.17
TRIM38O00635 AC009118.2-201ENST00000613275 655 ntBASIC16.14■□□□□ 0.17
TRIM38O00635 AL662799.1-202ENST00000614205 422 ntBASIC16.14■□□□□ 0.17
TRIM38O00635 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
TRIM38O00635 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TRIM38O00635 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
TRIM38O00635 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.14■□□□□ 0.17
TRIM38O00635 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRIM38O00635 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRIM38O00635 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM38O00635 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM38O00635 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM38O00635 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TRIM38O00635 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM38O00635 DBET-201ENST00000630918 3363 ntBASIC16.13■□□□□ 0.17
TRIM38O00635 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM38O00635 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms