Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
RHBDD3Q9Y3P4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 DBET-201ENST00000630918 3363 ntBASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.09□□□□□ -0.15
RHBDD3Q9Y3P4 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.08□□□□□ -0.15
RHBDD3Q9Y3P4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 MIR940-201ENST00000401276 94 ntBASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 AP002472.1-201ENST00000577490 586 ntBASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RHBDD3Q9Y3P4 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 PRAL-201ENST00000624952 3286 ntBASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RHBDD3Q9Y3P4 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms