Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
DEPDC4Q8N2C3 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
DEPDC4Q8N2C3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 SNX18-202ENST00000343017 3140 ntBASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 KRT18P27-201ENST00000427733 1299 ntBASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 POLD2P1-201ENST00000511220 997 ntBASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 AL139424.1-201ENST00000607572 797 ntBASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 AC092919.2-201ENST00000623631 1645 ntBASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 AC020658.6-201ENST00000623564 1870 ntBASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
DEPDC4Q8N2C3 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 AC006486.2-201ENST00000624246 2199 ntBASIC15□□□□□ -0.01
DEPDC4Q8N2C3 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 BANP-203ENST00000393207 2438 ntTSL 2 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15□□□□□ -0.01
DEPDC4Q8N2C3 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms