Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 SIAE-201ENST00000263593 5583 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AC134407.3-201ENST00000624035 2139 ntBASIC9.94□□□□□ -0.82
LINC00643Q86TS7 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
LINC00643Q86TS7 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 DNAJB12-201ENST00000338820 4360 ntTSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 KCNMA1-287ENST00000640632 2808 ntTSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ABCA2-202ENST00000341511 8063 ntAPPRIS P2 TSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 FBN1-201ENST00000316623 11756 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 KLHL7-202ENST00000339077 5620 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AR-208ENST00000612452 10676 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 TMED1-207ENST00000591695 809 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AD001527.2-201ENST00000622994 785 ntBASIC9.93□□□□□ -0.82
LINC00643Q86TS7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC008694.1-202ENST00000636953 945 ntBASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC113367.3-201ENST00000508316 1912 ntBASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC9.93□□□□□ -0.82
LINC00643Q86TS7 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms