Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
USP54Q70EL1 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
USP54Q70EL1 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC20.8■□□□□ 0.92
USP54Q70EL1 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 HLA-K-203ENST00000430151 1046 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 IGHJ2P-201ENST00000454480 60 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 OARD1-212ENST00000482515 832 ntTSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 SCARNA20.5-201ENST00000516991 142 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC20.8■□□□□ 0.92
USP54Q70EL1 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC20.8■□□□□ 0.92
USP54Q70EL1 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 ENPP7P14-201ENST00000621765 1040 ntBASIC20.8■□□□□ 0.92
USP54Q70EL1 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
USP54Q70EL1 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
USP54Q70EL1 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 AHCYP2-201ENST00000430630 1300 ntBASIC20.79■□□□□ 0.92
USP54Q70EL1 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
USP54Q70EL1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC20.79■□□□□ 0.92
USP54Q70EL1 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC20.79■□□□□ 0.92
USP54Q70EL1 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.79■□□□□ 0.92
USP54Q70EL1 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC20.79■□□□□ 0.92
USP54Q70EL1 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.79■□□□□ 0.92
USP54Q70EL1 GCK-209ENST00000616242 2260 ntTSL 5 BASIC20.79■□□□□ 0.92
USP54Q70EL1 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
USP54Q70EL1 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 AL354877.1-201ENST00000424412 413 ntBASIC20.79■□□□□ 0.92
USP54Q70EL1 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC20.79■□□□□ 0.92
USP54Q70EL1 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.79■□□□□ 0.92
USP54Q70EL1 KLK11-210ENST00000600362 759 ntTSL 3 BASIC20.79■□□□□ 0.92
USP54Q70EL1 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.79■□□□□ 0.92
USP54Q70EL1 AC068587.10-201ENST00000641210 219 ntBASIC20.79■□□□□ 0.92
USP54Q70EL1 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.79■□□□□ 0.92
USP54Q70EL1 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
USP54Q70EL1 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USP54Q70EL1 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
USP54Q70EL1 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.78■□□□□ 0.92
USP54Q70EL1 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 SNX21-203ENST00000372541 771 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC20.78■□□□□ 0.92
USP54Q70EL1 NUS1P3-201ENST00000423502 862 ntBASIC20.78■□□□□ 0.92
USP54Q70EL1 AC004066.1-201ENST00000502488 802 ntBASIC20.78■□□□□ 0.92
USP54Q70EL1 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC20.78■□□□□ 0.92
USP54Q70EL1 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.78■□□□□ 0.92
USP54Q70EL1 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USP54Q70EL1 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
USP54Q70EL1 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USP54Q70EL1 TISP43-201ENST00000409793 538 ntTSL 4 BASIC20.77■□□□□ 0.92
USP54Q70EL1 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.77■□□□□ 0.92
USP54Q70EL1 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC20.77■□□□□ 0.92
USP54Q70EL1 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC20.77■□□□□ 0.92
USP54Q70EL1 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.77■□□□□ 0.92
USP54Q70EL1 NCK2-206ENST00000522586 490 ntTSL 5 BASIC20.77■□□□□ 0.92
USP54Q70EL1 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC20.77■□□□□ 0.92
USP54Q70EL1 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC20.77■□□□□ 0.92
USP54Q70EL1 ACTG1P17-201ENST00000558391 1119 ntBASIC20.77■□□□□ 0.92
USP54Q70EL1 DUX4L47-201ENST00000566374 394 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms