Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC144BQ3MJ40 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC144BQ3MJ40 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC144BQ3MJ40 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 AL133215.2-201ENST00000609242 977 ntBASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 SNX33P1-201ENST00000592116 1762 ntBASIC18.58■□□□□ 0.56
CCDC144BQ3MJ40 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 LINC02228-204ENST00000642115 2962 ntBASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 OR8S1-201ENST00000310194 1080 ntBASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 AC004840.1-201ENST00000636359 365 ntBASIC18.57■□□□□ 0.56
CCDC144BQ3MJ40 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms