Protein–RNA interactions for Protein: P48539

PCP4, Calmodulin regulator protein PCP4, humanhuman

Predictions only

Length 62 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCP4P48539 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
PCP4P48539 LCMT1-AS2-201ENST00000562280 2601 ntTSL 2 BASIC10.72□□□□□ -0.69
PCP4P48539 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC10.72□□□□□ -0.69
PCP4P48539 WDR70-201ENST00000265107 2983 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
PCP4P48539 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
PCP4P48539 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 DOCK6-201ENST00000294618 6358 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC10.72□□□□□ -0.69
PCP4P48539 C1RL-201ENST00000266542 3394 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 SYNPO-202ENST00000394243 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 MIEF1-201ENST00000325301 5625 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
PCP4P48539 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC10.72□□□□□ -0.69
PCP4P48539 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 ELP4-222ENST00000640231 2062 ntTSL 5 BASIC10.72□□□□□ -0.69
PCP4P48539 TARS2-214ENST00000606933 2162 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC10.72□□□□□ -0.69
PCP4P48539 KDM8-201ENST00000286096 2462 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 ALDH3B2-204ENST00000530069 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PCP4P48539 TWNK-202ENST00000370228 3175 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC10.71□□□□□ -0.69
PCP4P48539 ADCY4-204ENST00000554068 3404 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 WDR41-201ENST00000296679 3958 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
PCP4P48539 MARCH3-201ENST00000308660 4196 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 DGKH-203ENST00000379274 4202 ntTSL 2 BASIC10.71□□□□□ -0.69
PCP4P48539 MAST4-202ENST00000403625 10711 ntAPPRIS ALT2 TSL 5 BASIC10.71□□□□□ -0.69
PCP4P48539 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 GEMIN5-201ENST00000285873 5397 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 FAM161A-203ENST00000405894 3684 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC10.71□□□□□ -0.69
PCP4P48539 RANBP3-203ENST00000439268 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PCP4P48539 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC10.71□□□□□ -0.69
PCP4P48539 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
PCP4P48539 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC10.71□□□□□ -0.69
PCP4P48539 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC10.71□□□□□ -0.69
PCP4P48539 AC073476.3-201ENST00000563949 2507 ntBASIC10.71□□□□□ -0.69
PCP4P48539 AC004854.2-201ENST00000608450 1441 ntBASIC10.71□□□□□ -0.69
PCP4P48539 AC112504.1-201ENST00000623415 1841 ntBASIC10.71□□□□□ -0.69
PCP4P48539 AL132642.2-201ENST00000623423 1998 ntBASIC10.71□□□□□ -0.69
PCP4P48539 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 TRERF1-202ENST00000354325 4138 ntTSL 5 BASIC10.71□□□□□ -0.7
PCP4P48539 C2orf69-201ENST00000319974 3728 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 AC092028.1-202ENST00000641483 3547 ntBASIC10.71□□□□□ -0.7
PCP4P48539 AC092028.1-201ENST00000641781 3540 ntBASIC10.71□□□□□ -0.7
PCP4P48539 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 ZNF572-201ENST00000319286 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 SP3-201ENST00000310015 6359 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 PNMA5-201ENST00000361887 3197 ntAPPRIS P2 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 SIGLEC11-203ENST00000447370 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 SLC4A9-201ENST00000432095 3086 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 CPT1C-203ENST00000392518 2910 ntAPPRIS P3 TSL 2 BASIC10.71□□□□□ -0.7
PCP4P48539 TXNDC2-202ENST00000357775 2830 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
PCP4P48539 ACSL1-210ENST00000513317 2469 ntAPPRIS ALT1 TSL 2 BASIC10.7□□□□□ -0.7
PCP4P48539 RGS3-207ENST00000374140 4591 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
PCP4P48539 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 RNF217-210ENST00000521654 11325 ntAPPRIS P2 TSL 2 BASIC10.7□□□□□ -0.7
PCP4P48539 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC10.7□□□□□ -0.7
PCP4P48539 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 UNC13B-206ENST00000617908 6432 ntTSL 5 BASIC10.7□□□□□ -0.7
PCP4P48539 PI4KAP2-201ENST00000360806 2080 ntBASIC10.7□□□□□ -0.7
PCP4P48539 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC10.7□□□□□ -0.7
PCP4P48539 SP100-205ENST00000409824 1802 ntTSL 5 BASIC10.7□□□□□ -0.7
PCP4P48539 KIAA1324-203ENST00000369939 3442 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
PCP4P48539 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC10.7□□□□□ -0.7
PCP4P48539 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC10.7□□□□□ -0.7
PCP4P48539 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC10.7□□□□□ -0.7
PCP4P48539 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 PELO-201ENST00000274311 4349 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 AC016396.2-201ENST00000562575 1417 ntBASIC10.7□□□□□ -0.7
PCP4P48539 VPS16-202ENST00000380445 2750 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 HNRNPR-201ENST00000302271 2629 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 SERINC4-202ENST00000319327 2630 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
PCP4P48539 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC10.7□□□□□ -0.7
PCP4P48539 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 CWC25-202ENST00000614790 3234 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
PCP4P48539 FAM222B-209ENST00000581407 4161 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms