RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DCAF8L2P0C7V8 631 aa19.45■□□□□ 0.7
SYNPO-202ENST00000394243 PELP1Q8IZL8 1130 aaKnown RBP19.31■□□□□ 0.68
SYNPO-202ENST00000394243 SUPT5HO00267 1087 aaKnown RBP19■□□□□ 0.63
SYNPO-202ENST00000394243 MYT1Q01538 1121 aa18.72■□□□□ 0.59
SYNPO-202ENST00000394243 EHMT2Q96KQ7 1210 aa18.67■□□□□ 0.58
SYNPO-202ENST00000394243 ERICH6Q7L0X2 663 aa18.66■□□□□ 0.58
SYNPO-202ENST00000394243 CENPBP07199 599 aaPredicted RBP18.52■□□□□ 0.56
SYNPO-202ENST00000394243 PCGF6Q9BYE7 350 aa18.49■□□□□ 0.55
SYNPO-202ENST00000394243 CCER1Q8TC90 406 aaPredicted RBP18.41■□□□□ 0.54
SYNPO-202ENST00000394243 SHROOM4Q9ULL8 1493 aa18.37■□□□□ 0.53
SYNPO-202ENST00000394243 APLP2Q06481 763 aa18.2■□□□□ 0.5
SYNPO-202ENST00000394243 ZEB1P37275 1124 aaPredicted RBP18.18■□□□□ 0.5
SYNPO-202ENST00000394243 TTBK1Q5TCY1 1321 aaPredicted RBP18.15■□□□□ 0.5
SYNPO-202ENST00000394243 YTHDC1Q96MU7 727 aaKnown RBP18.07■□□□□ 0.48
SYNPO-202ENST00000394243 FAM9AQ8IZU1 332 aaPredicted RBP18.01■□□□□ 0.47
SYNPO-202ENST00000394243 NEFLP07196 543 aa18■□□□□ 0.47
SYNPO-202ENST00000394243 HRCP23327 699 aa17.64■□□□□ 0.41
SYNPO-202ENST00000394243 NISCHQ9Y2I1 1504 aa17.62■□□□□ 0.41
SYNPO-202ENST00000394243 RANGAP1P46060 587 aaPredicted RBP17.6■□□□□ 0.41
SYNPO-202ENST00000394243 DAXXQ9UER7 740 aaPredicted RBP17.58■□□□□ 0.41
SYNPO-202ENST00000394243 TRIM41Q8WV44 630 aa17.47■□□□□ 0.39
SYNPO-202ENST00000394243 TRIM26Q12899 539 aaPredicted RBP17.45■□□□□ 0.38
SYNPO-202ENST00000394243 PPARGC1BQ86YN6 1023 aaKnown RBP17.44■□□□□ 0.38
SYNPO-202ENST00000394243 ATP1B4Q9UN42 357 aaPredicted RBP17.4■□□□□ 0.38
SYNPO-202ENST00000394243 RTL5Q5HYW3 569 aaPredicted RBP17.39■□□□□ 0.37
SYNPO-202ENST00000394243 UBTFP17480 764 aaKnown RBP17.33■□□□□ 0.36
SYNPO-202ENST00000394243 ZNF316A6NFI3 1004 aaPredicted RBP17.18■□□□□ 0.34
SYNPO-202ENST00000394243 DIEXFQ68CQ4 756 aaKnown RBP17.17■□□□□ 0.34
SYNPO-202ENST00000394243 GTF3C3Q9Y5Q9 886 aa17.16■□□□□ 0.34
SYNPO-202ENST00000394243 POLR3GLQ9BT43 218 aa17.11■□□□□ 0.33
SYNPO-202ENST00000394243 CNGB1Q14028 1251 aaPredicted RBP17.06■□□□□ 0.32
SYNPO-202ENST00000394243 BCANQ96GW7 911 aa17.04■□□□□ 0.32
SYNPO-202ENST00000394243 ITGAEP38570 1179 aa17■□□□□ 0.31
SYNPO-202ENST00000394243 CLSPNQ9HAW4 1339 aa17■□□□□ 0.31
SYNPO-202ENST00000394243 LOC105371045A0A1W2PR82 267 aa16.98■□□□□ 0.31
SYNPO-202ENST00000394243 HNRNPUL2Q1KMD3 747 aaKnown RBP16.97■□□□□ 0.31
SYNPO-202ENST00000394243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.96■□□□□ 0.31
SYNPO-202ENST00000394243 CDK11AQ9UQ88 783 aaPredicted RBP16.9■□□□□ 0.3
SYNPO-202ENST00000394243 EIF5BO60841 1220 aaKnown RBP16.87■□□□□ 0.29
SYNPO-202ENST00000394243 ACIN1Q9UKV3 1341 aaKnown RBP16.8■□□□□ 0.28
SYNPO-202ENST00000394243 CHIC1Q5VXU3 224 aa16.71■□□□□ 0.27
SYNPO-202ENST00000394243 GLIPR1L2Q4G1C9 344 aa16.65■□□□□ 0.26
SYNPO-202ENST00000394243 ANP32AP39687 249 aaKnown RBP16.64■□□□□ 0.25
SYNPO-202ENST00000394243 SLC4A1APQ9BWU0 796 aaKnown RBP16.62■□□□□ 0.25
SYNPO-202ENST00000394243 ANP32CO43423 234 aa16.6■□□□□ 0.25
SYNPO-202ENST00000394243 NPM2Q86SE8 214 aaKnown RBP16.55■□□□□ 0.24
SYNPO-202ENST00000394243 MYT1LQ9UL68 1186 aa16.54■□□□□ 0.24
SYNPO-202ENST00000394243 NEUROD1Q13562 356 aa16.53■□□□□ 0.24
SYNPO-202ENST00000394243 FKBP8Q14318 412 aa16.45■□□□□ 0.22
SYNPO-202ENST00000394243 NBR1Q14596 966 aa16.44■□□□□ 0.22
SYNPO-202ENST00000394243 ZBTB47Q9UFB7 747 aaPredicted RBP16.43■□□□□ 0.22
SYNPO-202ENST00000394243 FAM50AQ14320 339 aaKnown RBP16.41■□□□□ 0.22
SYNPO-202ENST00000394243 ANP32BQ92688 251 aaKnown RBP16.4■□□□□ 0.22
SYNPO-202ENST00000394243 BCL11AQ9H165 835 aa16.4■□□□□ 0.22
SYNPO-202ENST00000394243 SCAF1Q9H7N4 1312 aaKnown RBP16.38■□□□□ 0.21
SYNPO-202ENST00000394243 CANXP27824 592 aaKnown RBP16.37■□□□□ 0.21
SYNPO-202ENST00000394243 TRIM52Q96A61 297 aa16.35■□□□□ 0.21
SYNPO-202ENST00000394243 ZNF326Q5BKZ1 582 aaKnown RBP16.27■□□□□ 0.2
SYNPO-202ENST00000394243 ARXQ96QS3 562 aa16.26■□□□□ 0.19
SYNPO-202ENST00000394243 HSP90AA1P07900 732 aaKnown RBP16.22■□□□□ 0.19
SYNPO-202ENST00000394243 ANP32EQ9BTT0 268 aa16.16■□□□□ 0.18
SYNPO-202ENST00000394243 HNRNPUQ00839 825 aaKnown RBP eCLIP16.14■□□□□ 0.17
SYNPO-202ENST00000394243 UPF2Q9HAU5 1272 aaKnown RBP16.14■□□□□ 0.17
SYNPO-202ENST00000394243 CCDC136Q96JN2 1154 aa16.09■□□□□ 0.17
SYNPO-202ENST00000394243 SLC24A1O60721 1099 aa16.09■□□□□ 0.17
SYNPO-202ENST00000394243 FAM9BQ8IZU0 186 aa16.04■□□□□ 0.16
SYNPO-202ENST00000394243 DDX10Q13206 875 aaKnown RBP16.02■□□□□ 0.16
SYNPO-202ENST00000394243 RTN4Q9NQC3 1192 aaKnown RBP16.02■□□□□ 0.15
SYNPO-202ENST00000394243 IRX6P78412 446 aaPredicted RBP16.02■□□□□ 0.15
SYNPO-202ENST00000394243 NEFMP07197 916 aa16.01■□□□□ 0.15
SYNPO-202ENST00000394243 TNNT2P45379 298 aaPredicted RBP15.99■□□□□ 0.15
SYNPO-202ENST00000394243 SALL2Q9Y467 1007 aaPredicted RBP15.98■□□□□ 0.15
SYNPO-202ENST00000394243 TRIM44Q96DX7 344 aaPredicted RBP15.97■□□□□ 0.15
SYNPO-202ENST00000394243 MIER1Q8N108 512 aa15.96■□□□□ 0.15
SYNPO-202ENST00000394243 NAP1L5Q96NT1 182 aaPredicted RBP15.89■□□□□ 0.14
SYNPO-202ENST00000394243 DDRGK1Q96HY6 314 aa15.88■□□□□ 0.13
SYNPO-202ENST00000394243 ERICH6BQ5W0A0 696 aa15.87■□□□□ 0.13
SYNPO-202ENST00000394243 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.87■□□□□ 0.13
SYNPO-202ENST00000394243 TONSLQ96HA7 1378 aa15.83■□□□□ 0.12
SYNPO-202ENST00000394243 TMC1Q8TDI8 760 aa15.82■□□□□ 0.12
SYNPO-202ENST00000394243 BECN1Q14457 450 aa15.81■□□□□ 0.12
SYNPO-202ENST00000394243 DCAF1Q9Y4B6 1507 aa15.79■□□□□ 0.12
SYNPO-202ENST00000394243 MRS2Q9HD23 443 aa15.78■□□□□ 0.12
SYNPO-202ENST00000394243 DNTTIP2Q5QJE6 756 aaKnown RBP15.77■□□□□ 0.12
SYNPO-202ENST00000394243 LAS1LQ9Y4W2 734 aaKnown RBP15.76■□□□□ 0.11
SYNPO-202ENST00000394243 PPM1GO15355 546 aaPredicted RBP15.76■□□□□ 0.11
SYNPO-202ENST00000394243 CDK11BP21127 795 aaKnown RBP15.76■□□□□ 0.11
SYNPO-202ENST00000394243 PTMAP06454 111 aaKnown RBP15.74■□□□□ 0.11
SYNPO-202ENST00000394243 DEKP35659 375 aaKnown RBP15.73■□□□□ 0.11
SYNPO-202ENST00000394243 NOP58Q9Y2X3 529 aaKnown RBP15.73■□□□□ 0.11
SYNPO-202ENST00000394243 NCLP19338 710 aaKnown RBP15.72■□□□□ 0.11
SYNPO-202ENST00000394243 GOLGA6L22H0YM25 854 aa15.71■□□□□ 0.11
SYNPO-202ENST00000394243 P3H3Q8IVL6 736 aa15.7■□□□□ 0.1
SYNPO-202ENST00000394243 AMER1Q5JTC6 1135 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-202ENST00000394243 HIRIP3Q9BW71 556 aaPredicted RBP15.68■□□□□ 0.1
SYNPO-202ENST00000394243 SUPT16HQ9Y5B9 1047 aaKnown RBP15.68■□□□□ 0.1
SYNPO-202ENST00000394243 WDR43Q15061 677 aaKnown RBP eCLIP15.67■□□□□ 0.1
SYNPO-202ENST00000394243 ARID3CA6NKF2 412 aa15.64■□□□□ 0.09
SYNPO-202ENST00000394243 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.63■□□□□ 0.09
SYNPO-202ENST00000394243 CSRNP3Q8WYN3 585 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms