Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RORAP35398 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.22■□□□□ 0.03
RORAP35398 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RORAP35398 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.22■□□□□ 0.03
RORAP35398 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.22■□□□□ 0.03
RORAP35398 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
RORAP35398 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
RORAP35398 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.22■□□□□ 0.03
RORAP35398 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 DFFBP1-201ENST00000433250 979 ntBASIC15.22■□□□□ 0.03
RORAP35398 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.22■□□□□ 0.03
RORAP35398 RN7SL692P-201ENST00000464677 288 ntBASIC15.22■□□□□ 0.03
RORAP35398 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RORAP35398 DOC2GP-202ENST00000514950 1163 ntBASIC15.22■□□□□ 0.03
RORAP35398 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.22■□□□□ 0.03
RORAP35398 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
RORAP35398 CR383656.12-201ENST00000549567 513 ntBASIC15.22■□□□□ 0.03
RORAP35398 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
RORAP35398 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.22■□□□□ 0.03
RORAP35398 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.22■□□□□ 0.03
RORAP35398 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.22■□□□□ 0.03
RORAP35398 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.22■□□□□ 0.03
RORAP35398 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.22■□□□□ 0.03
RORAP35398 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
RORAP35398 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
RORAP35398 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.22■□□□□ 0.03
RORAP35398 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RORAP35398 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
RORAP35398 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.21■□□□□ 0.03
RORAP35398 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.21■□□□□ 0.03
RORAP35398 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
RORAP35398 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.21■□□□□ 0.03
RORAP35398 FO393414.2-201ENST00000405153 598 ntBASIC15.21■□□□□ 0.03
RORAP35398 COX5BP8-201ENST00000416911 349 ntBASIC15.21■□□□□ 0.03
RORAP35398 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.21■□□□□ 0.03
RORAP35398 NME2P1-201ENST00000426182 414 ntBASIC15.21■□□□□ 0.03
RORAP35398 HIST3H2BA-201ENST00000436555 524 ntBASIC15.21■□□□□ 0.03
RORAP35398 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.21■□□□□ 0.03
RORAP35398 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 AC093004.1-201ENST00000508850 424 ntBASIC15.21■□□□□ 0.03
RORAP35398 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.21■□□□□ 0.03
RORAP35398 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.21■□□□□ 0.03
RORAP35398 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.21■□□□□ 0.03
RORAP35398 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.21■□□□□ 0.03
RORAP35398 AC140912.1-201ENST00000577171 1054 ntBASIC15.21■□□□□ 0.03
RORAP35398 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.21■□□□□ 0.03
RORAP35398 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
RORAP35398 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
RORAP35398 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.21■□□□□ 0.03
RORAP35398 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
RORAP35398 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.21■□□□□ 0.03
RORAP35398 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
RORAP35398 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RORAP35398 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RORAP35398 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
RORAP35398 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
RORAP35398 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
RORAP35398 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.21■□□□□ 0.02
RORAP35398 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
RORAP35398 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RORAP35398 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RORAP35398 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.2■□□□□ 0.02
RORAP35398 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RORAP35398 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
RORAP35398 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms