Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.22■□□□□ 0.19
VCANP13611 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 MRPL37P1-201ENST00000592451 1337 ntBASIC16.22■□□□□ 0.19
VCANP13611 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.22■□□□□ 0.19
VCANP13611 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.22■□□□□ 0.19
VCANP13611 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 RBM8B-201ENST00000555532 525 ntBASIC16.22■□□□□ 0.19
VCANP13611 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.22■□□□□ 0.19
VCANP13611 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.22■□□□□ 0.19
VCANP13611 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
VCANP13611 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VCANP13611 AC005052.1-201ENST00000625181 2492 ntBASIC16.22■□□□□ 0.19
VCANP13611 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.22■□□□□ 0.19
VCANP13611 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.22■□□□□ 0.19
VCANP13611 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VCANP13611 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 TPM3P8-201ENST00000330554 643 ntBASIC16.21■□□□□ 0.19
VCANP13611 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 AC079178.1-201ENST00000420915 656 ntBASIC16.21■□□□□ 0.19
VCANP13611 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC16.21■□□□□ 0.19
VCANP13611 AL161773.1-201ENST00000624845 863 ntBASIC16.21■□□□□ 0.19
VCANP13611 AL805961.1-203ENST00000641078 1258 ntBASIC16.21■□□□□ 0.19
VCANP13611 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.21■□□□□ 0.19
VCANP13611 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.21■□□□□ 0.19
VCANP13611 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC16.21■□□□□ 0.19
VCANP13611 AC007718.1-201ENST00000621078 280 ntBASIC16.21■□□□□ 0.19
VCANP13611 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
VCANP13611 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.21■□□□□ 0.19
VCANP13611 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
VCANP13611 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VCANP13611 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VCANP13611 CTSL-202ENST00000342020 933 ntTSL 2 BASIC16.21■□□□□ 0.18
VCANP13611 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.21■□□□□ 0.18
VCANP13611 AP002803.1-201ENST00000528836 498 ntBASIC16.21■□□□□ 0.18
VCANP13611 AL627230.2-201ENST00000613254 655 ntBASIC16.21■□□□□ 0.18
VCANP13611 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VCANP13611 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VCANP13611 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VCANP13611 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
VCANP13611 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
VCANP13611 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
VCANP13611 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC16.2■□□□□ 0.18
VCANP13611 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
VCANP13611 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VCANP13611 BNIP3P13-201ENST00000599968 566 ntBASIC16.2■□□□□ 0.18
VCANP13611 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.2■□□□□ 0.18
VCANP13611 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
VCANP13611 AL512652.2-201ENST00000625156 1716 ntBASIC16.2■□□□□ 0.18
VCANP13611 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
VCANP13611 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.2■□□□□ 0.18
VCANP13611 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.2■□□□□ 0.18
VCANP13611 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VCANP13611 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC16.2■□□□□ 0.18
VCANP13611 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.2■□□□□ 0.18
VCANP13611 AC012044.1-201ENST00000603431 297 ntBASIC16.2■□□□□ 0.18
VCANP13611 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCANP13611 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms