Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AL596087.1-201ENST00000400979 1969 ntBASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.15■□□□□ 0.02
PTCHD1Q96NR3 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 BASP1P1-201ENST00000430708 665 ntBASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AC092580.3-201ENST00000430932 139 ntBASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 HLA-V-204ENST00000476601 1289 ntBASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AL079307.3-201ENST00000556114 283 ntBASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.14■□□□□ 0.01
PTCHD1Q96NR3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 HAUS4P1-201ENST00000406739 1145 ntBASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 HMGN1P19-201ENST00000436976 333 ntBASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 AL136982.4-201ENST00000437689 1740 ntBASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 AL512638.1-201ENST00000457493 794 ntBASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 RNA5SP421-201ENST00000516864 134 ntBASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 AL691432.1-201ENST00000596308 1422 ntBASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PTCHD1Q96NR3 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PTCHD1Q96NR3 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms