Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 AL035456.1-201ENST00000456064 1369 ntBASIC12.4□□□□□ -0.42
CCDC140Q96MF4 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
CCDC140Q96MF4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
CCDC140Q96MF4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 AC046158.3-201ENST00000624947 2558 ntBASIC12.39□□□□□ -0.43
CCDC140Q96MF4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 AC069262.1-201ENST00000539058 672 ntBASIC12.39□□□□□ -0.43
CCDC140Q96MF4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 RN7SL828P-201ENST00000607615 303 ntBASIC12.39□□□□□ -0.43
CCDC140Q96MF4 AL133215.2-201ENST00000609242 977 ntBASIC12.39□□□□□ -0.43
CCDC140Q96MF4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 Z92544.3-201ENST00000624747 417 ntBASIC12.39□□□□□ -0.43
CCDC140Q96MF4 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC12.39□□□□□ -0.43
CCDC140Q96MF4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
CCDC140Q96MF4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms