Protein–RNA interactions for Protein: Q92544

TM9SF4, Transmembrane 9 superfamily member 4, humanhuman

Predictions only

Length 642 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4Q92544 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 MIR661-201ENST00000384842 89 ntBASIC15.19■□□□□ 0.02
TM9SF4Q92544 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 CETN4P-206ENST00000642099 2168 ntBASIC15.19■□□□□ 0.02
TM9SF4Q92544 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TM9SF4Q92544 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 SERBP1P5-201ENST00000510079 1181 ntBASIC15.18■□□□□ 0.02
TM9SF4Q92544 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 AP002490.2-201ENST00000524791 560 ntBASIC15.18■□□□□ 0.02
TM9SF4Q92544 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 CR383656.12-201ENST00000549567 513 ntBASIC15.18■□□□□ 0.02
TM9SF4Q92544 AC023824.1-201ENST00000562945 2975 ntBASIC15.18■□□□□ 0.02
TM9SF4Q92544 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 SPTSSB-204ENST00000617024 1292 ntBASIC15.18■□□□□ 0.02
TM9SF4Q92544 SPDYE12P-201ENST00000618416 771 ntBASIC15.18■□□□□ 0.02
TM9SF4Q92544 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF4Q92544 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF4Q92544 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
TM9SF4Q92544 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF4Q92544 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF4Q92544 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF4Q92544 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF4Q92544 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF4Q92544 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF4Q92544 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF4Q92544 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF4Q92544 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF4Q92544 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.17■□□□□ 0.02
TM9SF4Q92544 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF4Q92544 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms