Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AC098614.1-201ENST00000368528 745 ntBASIC17.42■□□□□ 0.38
VPS52Q8N1B4 DGCR5-201ENST00000399539 862 ntBASIC17.42■□□□□ 0.38
VPS52Q8N1B4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 DOC2GP-202ENST00000514950 1163 ntBASIC17.42■□□□□ 0.38
VPS52Q8N1B4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AC044860.1-202ENST00000559481 777 ntBASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AC020765.3-201ENST00000613051 740 ntBASIC17.42■□□□□ 0.38
VPS52Q8N1B4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 PCDHA1-201ENST00000378133 2726 ntBASIC17.42■□□□□ 0.38
VPS52Q8N1B4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VPS52Q8N1B4 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AL391825.1-201ENST00000457671 1364 ntBASIC17.41■□□□□ 0.38
VPS52Q8N1B4 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AC087499.6-201ENST00000411576 835 ntBASIC17.41■□□□□ 0.38
VPS52Q8N1B4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 U91328.1-201ENST00000437528 223 ntBASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VPS52Q8N1B4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
VPS52Q8N1B4 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS52Q8N1B4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.4■□□□□ 0.38
VPS52Q8N1B4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS52Q8N1B4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS52Q8N1B4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VPS52Q8N1B4 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.4■□□□□ 0.38
VPS52Q8N1B4 LINC02199-201ENST00000506655 2702 ntBASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms