Protein–RNA interactions for Protein: Q6PCD5

RFWD3, E3 ubiquitin-protein ligase RFWD3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFWD3Q6PCD5 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 AL035456.1-201ENST00000456064 1369 ntBASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 AL592424.1-201ENST00000563624 1536 ntBASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
RFWD3Q6PCD5 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AL589739.1-201ENST00000607720 493 ntBASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
RFWD3Q6PCD5 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 INGX-202ENST00000489074 768 ntBASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 MIR4321-201ENST00000592276 80 ntBASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.73■□□□□ 0.27
RFWD3Q6PCD5 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms