Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.8■□□□□ 0.12
PKNOX1P55347 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
PKNOX1P55347 AC126755.1-201ENST00000525846 6405 ntBASIC15.8■□□□□ 0.12
PKNOX1P55347 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.8■□□□□ 0.12
PKNOX1P55347 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PKNOX1P55347 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.79■□□□□ 0.12
PKNOX1P55347 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.79■□□□□ 0.12
PKNOX1P55347 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 MRPL3P1-201ENST00000400109 1033 ntBASIC15.79■□□□□ 0.12
PKNOX1P55347 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.79■□□□□ 0.12
PKNOX1P55347 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.79■□□□□ 0.12
PKNOX1P55347 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.79■□□□□ 0.12
PKNOX1P55347 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PKNOX1P55347 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.79■□□□□ 0.12
PKNOX1P55347 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.79■□□□□ 0.12
PKNOX1P55347 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PKNOX1P55347 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PKNOX1P55347 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PKNOX1P55347 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.79■□□□□ 0.12
PKNOX1P55347 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
PKNOX1P55347 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PKNOX1P55347 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 AL009178.2-201ENST00000597278 2719 ntBASIC15.78■□□□□ 0.12
PKNOX1P55347 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PKNOX1P55347 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.78■□□□□ 0.12
PKNOX1P55347 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.78■□□□□ 0.12
PKNOX1P55347 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.78■□□□□ 0.12
PKNOX1P55347 Z83851.2-201ENST00000609564 659 ntBASIC15.78■□□□□ 0.12
PKNOX1P55347 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PKNOX1P55347 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.78■□□□□ 0.12
PKNOX1P55347 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PKNOX1P55347 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.78■□□□□ 0.12
PKNOX1P55347 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.78■□□□□ 0.12
PKNOX1P55347 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.78■□□□□ 0.12
PKNOX1P55347 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.78■□□□□ 0.12
PKNOX1P55347 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
PKNOX1P55347 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PKNOX1P55347 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.77■□□□□ 0.12
PKNOX1P55347 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.77■□□□□ 0.12
PKNOX1P55347 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
PKNOX1P55347 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.77■□□□□ 0.12
PKNOX1P55347 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.77■□□□□ 0.12
PKNOX1P55347 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PKNOX1P55347 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms