Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.05■□□□□ 0.16
XRCC1P18887 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
XRCC1P18887 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.05■□□□□ 0.16
XRCC1P18887 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.05■□□□□ 0.16
XRCC1P18887 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.05■□□□□ 0.16
XRCC1P18887 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.05■□□□□ 0.16
XRCC1P18887 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.05■□□□□ 0.16
XRCC1P18887 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.05■□□□□ 0.16
XRCC1P18887 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
XRCC1P18887 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
XRCC1P18887 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.05■□□□□ 0.16
XRCC1P18887 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
XRCC1P18887 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 TUBB3P1-201ENST00000405796 1332 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 GPAA1P2-202ENST00000606848 1787 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 TNRC18P2-201ENST00000417666 2714 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 AC022532.1-201ENST00000624563 1728 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
XRCC1P18887 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 AL031731.1-201ENST00000642131 2094 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 AP005117.1-202ENST00000581724 1908 ntBASIC16.04■□□□□ 0.16
XRCC1P18887 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
XRCC1P18887 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.04■□□□□ 0.16
XRCC1P18887 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.03■□□□□ 0.16
XRCC1P18887 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 GGT4P-201ENST00000623672 1708 ntBASIC16.03■□□□□ 0.16
XRCC1P18887 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.03■□□□□ 0.16
XRCC1P18887 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 MIR770-201ENST00000390219 98 ntBASIC16.03■□□□□ 0.16
XRCC1P18887 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.03■□□□□ 0.16
XRCC1P18887 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.03■□□□□ 0.16
XRCC1P18887 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.03■□□□□ 0.16
XRCC1P18887 AC051619.7-201ENST00000568314 623 ntBASIC16.03■□□□□ 0.16
XRCC1P18887 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.03■□□□□ 0.16
XRCC1P18887 SPTSSB-204ENST00000617024 1292 ntBASIC16.03■□□□□ 0.16
XRCC1P18887 AC093512.1-201ENST00000617969 520 ntBASIC16.03■□□□□ 0.16
XRCC1P18887 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
XRCC1P18887 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
XRCC1P18887 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms