Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 AC011700.1-201ENST00000610409 2627 ntBASIC9.97□□□□□ -0.81
LINC00643Q86TS7 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 LPO-203ENST00000421678 2729 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 KRT17P1-201ENST00000399211 1546 ntBASIC9.97□□□□□ -0.81
LINC00643Q86TS7 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC9.97□□□□□ -0.81
LINC00643Q86TS7 DNM1P41-201ENST00000623634 3350 ntBASIC9.97□□□□□ -0.81
LINC00643Q86TS7 BNIP3P1-202ENST00000550043 1585 ntBASIC9.97□□□□□ -0.81
LINC00643Q86TS7 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 LINC01144-201ENST00000626198 1710 ntBASIC9.96□□□□□ -0.81
LINC00643Q86TS7 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 CARHSP1-218ENST00000614449 2931 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 KIAA1614-202ENST00000367588 9654 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
LINC00643Q86TS7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 MBP-208ENST00000397866 2145 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 KRT18P23-201ENST00000435622 1283 ntBASIC9.96□□□□□ -0.82
LINC00643Q86TS7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 AC069236.1-201ENST00000604339 616 ntBASIC9.96□□□□□ -0.82
LINC00643Q86TS7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 MAPT-IT1-201ENST00000624111 3016 ntBASIC9.96□□□□□ -0.82
LINC00643Q86TS7 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 AC114271.1-201ENST00000612689 2813 ntBASIC9.96□□□□□ -0.82
LINC00643Q86TS7 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.82
LINC00643Q86TS7 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DGKD-202ENST00000409813 6228 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
LINC00643Q86TS7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms