Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
USP54Q70EL1 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC20.86■□□□□ 0.93
USP54Q70EL1 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
USP54Q70EL1 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 ACR-203ENST00000529621 708 ntTSL 5 BASIC20.86■□□□□ 0.93
USP54Q70EL1 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
USP54Q70EL1 AP006547.1-201ENST00000563435 692 ntBASIC20.86■□□□□ 0.93
USP54Q70EL1 CYGB-203ENST00000589145 788 ntTSL 3 BASIC20.86■□□□□ 0.93
USP54Q70EL1 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC20.86■□□□□ 0.93
USP54Q70EL1 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.86■□□□□ 0.93
USP54Q70EL1 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
USP54Q70EL1 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 AC018735.1-201ENST00000437208 1502 ntBASIC20.86■□□□□ 0.93
USP54Q70EL1 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC20.86■□□□□ 0.93
USP54Q70EL1 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
USP54Q70EL1 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
USP54Q70EL1 AC084364.1-201ENST00000551967 1556 ntBASIC20.86■□□□□ 0.93
USP54Q70EL1 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
USP54Q70EL1 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 MIR3615-201ENST00000581999 87 ntBASIC20.86■□□□□ 0.93
USP54Q70EL1 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.86■□□□□ 0.93
USP54Q70EL1 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP54Q70EL1 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
USP54Q70EL1 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
USP54Q70EL1 GRN-222ENST00000639447 1314 ntTSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
USP54Q70EL1 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 TKT-202ENST00000423516 2075 ntTSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 AC079178.1-201ENST00000420915 656 ntBASIC20.85■□□□□ 0.93
USP54Q70EL1 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC20.85■□□□□ 0.93
USP54Q70EL1 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC20.85■□□□□ 0.93
USP54Q70EL1 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
USP54Q70EL1 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC20.85■□□□□ 0.93
USP54Q70EL1 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.85■□□□□ 0.93
USP54Q70EL1 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP54Q70EL1 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USP54Q70EL1 LINC02447-202ENST00000501888 2146 ntBASIC20.84■□□□□ 0.93
USP54Q70EL1 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.84■□□□□ 0.93
USP54Q70EL1 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 AL645937.2-201ENST00000396808 931 ntBASIC20.84■□□□□ 0.93
USP54Q70EL1 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC20.84■□□□□ 0.93
USP54Q70EL1 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC20.84■□□□□ 0.93
USP54Q70EL1 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP54Q70EL1 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC20.84■□□□□ 0.93
USP54Q70EL1 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
USP54Q70EL1 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC20.84■□□□□ 0.93
USP54Q70EL1 PCDHA12-202ENST00000613593 2588 ntBASIC20.84■□□□□ 0.93
USP54Q70EL1 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP54Q70EL1 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP54Q70EL1 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.83■□□□□ 0.93
USP54Q70EL1 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.83■□□□□ 0.93
USP54Q70EL1 CD8B2-202ENST00000417670 633 ntBASIC20.83■□□□□ 0.93
USP54Q70EL1 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP54Q70EL1 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP54Q70EL1 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms