Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF43Q68DV7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF43Q68DV7 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF43Q68DV7 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF43Q68DV7 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
RNF43Q68DV7 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
RNF43Q68DV7 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF43Q68DV7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF43Q68DV7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
RNF43Q68DV7 AP3S2-216ENST00000617003 1561 ntBASIC16.89■□□□□ 0.3
RNF43Q68DV7 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.89■□□□□ 0.3
RNF43Q68DV7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
RNF43Q68DV7 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 TREML5P-201ENST00000421694 576 ntBASIC16.89■□□□□ 0.29
RNF43Q68DV7 AC098859.1-201ENST00000502915 1238 ntBASIC16.89■□□□□ 0.29
RNF43Q68DV7 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 AC140878.1-201ENST00000565277 250 ntBASIC16.89■□□□□ 0.29
RNF43Q68DV7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
RNF43Q68DV7 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
RNF43Q68DV7 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.88■□□□□ 0.29
RNF43Q68DV7 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 MEIS3P1-201ENST00000495167 958 ntBASIC16.88■□□□□ 0.29
RNF43Q68DV7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 SPTSSB-204ENST00000617024 1292 ntBASIC16.88■□□□□ 0.29
RNF43Q68DV7 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
RNF43Q68DV7 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
RNF43Q68DV7 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms