Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.51■□□□□ 0.23
HMGA1P17096 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
HMGA1P17096 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
HMGA1P17096 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.51■□□□□ 0.23
HMGA1P17096 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGA1P17096 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGA1P17096 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
HMGA1P17096 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
HMGA1P17096 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGA1P17096 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HMGA1P17096 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGA1P17096 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGA1P17096 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.5■□□□□ 0.23
HMGA1P17096 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
HMGA1P17096 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGA1P17096 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.5■□□□□ 0.23
HMGA1P17096 AC000095.1-201ENST00000603208 874 ntBASIC16.5■□□□□ 0.23
HMGA1P17096 AC133539.2-201ENST00000604757 467 ntBASIC16.5■□□□□ 0.23
HMGA1P17096 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
HMGA1P17096 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HMGA1P17096 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGA1P17096 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGA1P17096 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.5■□□□□ 0.23
HMGA1P17096 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.5■□□□□ 0.23
HMGA1P17096 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HMGA1P17096 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
HMGA1P17096 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
HMGA1P17096 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.5■□□□□ 0.23
HMGA1P17096 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 PCDH8P1-201ENST00000428983 2773 ntBASIC16.49■□□□□ 0.23
HMGA1P17096 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGA1P17096 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGA1P17096 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGA1P17096 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGA1P17096 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 RAB43P1-201ENST00000561790 589 ntBASIC16.49■□□□□ 0.23
HMGA1P17096 KRT8P22-201ENST00000562317 1415 ntBASIC16.49■□□□□ 0.23
HMGA1P17096 AC069224.1-201ENST00000566372 1715 ntBASIC16.49■□□□□ 0.23
HMGA1P17096 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 MIR4313-201ENST00000580760 101 ntBASIC16.49■□□□□ 0.23
HMGA1P17096 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGA1P17096 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGA1P17096 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGA1P17096 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
HMGA1P17096 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
HMGA1P17096 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms