Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC27.45■■□□□ 1.991e-8■■■■■ 103.4
SF3B1O75533 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.43■■□□□ 1.986e-6■■■■■ 103.4
SF3B1O75533 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC27.38■■□□□ 1.972e-6■■■■■ 103.4
SF3B1O75533 RMND5B-202ENST00000502814 653 ntTSL 327.38■■□□□ 1.976e-6■■■■■ 103.4
SF3B1O75533 RFXANK-204ENST00000421262 856 ntTSL 527.34■■□□□ 1.971e-8■■■■■ 103.4
SF3B1O75533 WDFY3-204ENST00000502713 425 ntTSL 327.26■■□□□ 1.951e-8■■■■■ 103.4
SF3B1O75533 PPP4C-213ENST00000568810 1080 ntTSL 227.26■■□□□ 1.956e-6■■■■■ 103.4
SF3B1O75533 PPP4C-206ENST00000563597 815 ntTSL 327.26■■□□□ 1.956e-6■■■■■ 103.4
SF3B1O75533 POLR2D-204ENST00000487079 1037 ntTSL 227.25■■□□□ 1.951e-8■■■■■ 103.4
SF3B1O75533 U2AF1-208ENST00000471250 1676 ntTSL 227.15■■□□□ 1.946e-6■■■■■ 103.4
SF3B1O75533 RNF207-206ENST00000485539 1413 ntTSL 1 (best)26.97■■□□□ 1.911e-8■■■■■ 103.4
SF3B1O75533 PPP4C-209ENST00000566749 1490 ntTSL 526.85■■□□□ 1.896e-6■■■■■ 103.4
SF3B1O75533 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.66■■□□□ 1.866e-6■■■■■ 103.4
SF3B1O75533 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC26.65■■□□□ 1.861e-8■■■■■ 103.4
SF3B1O75533 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.826e-6■■■■■ 103.4
SF3B1O75533 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.816e-6■■■■■ 103.4
SF3B1O75533 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.37■■□□□ 1.811e-8■■■■■ 103.4
SF3B1O75533 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC26.31■■□□□ 1.81e-8■■■■■ 103.4
SF3B1O75533 JMJD8-213ENST00000569396 729 ntTSL 526.27■■□□□ 1.86e-6■■■■■ 103.4
SF3B1O75533 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.791e-8■■■■■ 103.4
SF3B1O75533 SLBP-203ENST00000480936 558 ntTSL 426.24■■□□□ 1.791e-6■■■■■ 103.4
SF3B1O75533 PPP4C-204ENST00000562664 941 ntTSL 326.17■■□□□ 1.786e-6■■■■■ 103.4
SF3B1O75533 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.776e-6■■■■■ 103.4
SF3B1O75533 FAM76B-212ENST00000545654 2001 ntTSL 226.05■■□□□ 1.761e-8■■■■■ 103.4
SF3B1O75533 PPP4C-203ENST00000562222 742 ntTSL 325.99■■□□□ 1.756e-6■■■■■ 103.4
SF3B1O75533 RMND5B-207ENST00000512663 738 ntTSL 525.93■■□□□ 1.746e-6■■■■■ 103.4
SF3B1O75533 SLC25A1-203ENST00000461267 804 ntTSL 325.82■■□□□ 1.722e-12■■■■■ 103.4
SF3B1O75533 EMID1-204ENST00000429226 769 ntTSL 525.8■■□□□ 1.721e-8■■■■■ 103.4
SF3B1O75533 RNF220-208ENST00000471494 720 ntTSL 525.7■■□□□ 1.711e-8■■■■■ 103.4
SF3B1O75533 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC25.7■■□□□ 1.76e-6■■■■■ 103.4
SF3B1O75533 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.68■■□□□ 1.76e-6■■■■■ 103.4
SF3B1O75533 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.76e-6■■■■■ 103.4
SF3B1O75533 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.696e-6■■■■■ 103.4
SF3B1O75533 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.57■■□□□ 1.682e-6■■■■■ 103.4
SF3B1O75533 S100PBP-207ENST00000482212 706 ntTSL 225.56■■□□□ 1.686e-6■■■■■ 103.4
SF3B1O75533 FNDC4-203ENST00000491414 1647 ntTSL 525.47■■□□□ 1.676e-6■■■■■ 103.4
SF3B1O75533 ZNF800-207ENST00000485577 1478 ntTSL 525.47■■□□□ 1.676e-6■■■■■ 103.4
SF3B1O75533 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC25.46■■□□□ 1.676e-6■■■■■ 103.4
SF3B1O75533 ENGASE-210ENST00000585160 284 ntTSL 325.45■■□□□ 1.666e-6■■■■■ 103.4
SF3B1O75533 NKIRAS2-210ENST00000485789 997 ntTSL 225.24■■□□□ 1.631e-8■■■■■ 103.4
SF3B1O75533 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.24■■□□□ 1.631e-8■■■■■ 103.4
SF3B1O75533 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.89■■□□□ 1.571e-8■■■■■ 103.4
SF3B1O75533 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.86■■□□□ 1.576e-6■■■■■ 103.4
SF3B1O75533 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.86■■□□□ 1.571e-8■■■■■ 103.4
SF3B1O75533 SATB2-AS1-203ENST00000442967 560 ntTSL 424.85■■□□□ 1.571e-8■■■■■ 103.4
SF3B1O75533 SERINC5-206ENST00000632581 1573 ntTSL 224.82■■□□□ 1.561e-8■■■■■ 103.4
SF3B1O75533 SERINC5-204ENST00000512972 1627 ntTSL 224.8■■□□□ 1.561e-8■■■■■ 103.4
SF3B1O75533 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.546e-6■■■■■ 103.4
SF3B1O75533 CD151-210ENST00000526661 894 ntTSL 224.5■■□□□ 1.511e-8■■■■■ 103.4
SF3B1O75533 EBPL-207ENST00000495963 1026 ntTSL 1 (best)24.47■■□□□ 1.512e-6■■■■■ 103.4
SF3B1O75533 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.47■■□□□ 1.512e-6■■■■■ 103.4
SF3B1O75533 RRP1-204ENST00000475534 588 ntTSL 324.28■■□□□ 1.486e-6■■■■■ 103.4
SF3B1O75533 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC24.18■■□□□ 1.461e-8■■■■■ 103.4
SF3B1O75533 C15orf61-204ENST00000560547 461 ntTSL 224.18■■□□□ 1.461e-8■■■■■ 103.4
SF3B1O75533 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.466e-6■■■■■ 103.4
SF3B1O75533 HNRNPLL-211ENST00000498516 655 ntTSL 324.13■■□□□ 1.452e-12■■■■■ 103.4
SF3B1O75533 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC24.13■■□□□ 1.456e-6■■■■■ 103.4
SF3B1O75533 PKN1-207ENST00000586557 899 ntTSL 524.06■■□□□ 1.446e-6■■■■■ 103.4
SF3B1O75533 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.441e-6■■■■■ 103.4
SF3B1O75533 MAPKAP1-203ENST00000373496 693 ntTSL 323.89■■□□□ 1.426e-6■■■■■ 103.4
SF3B1O75533 PPP4C-205ENST00000563200 1447 ntTSL 523.87■■□□□ 1.416e-6■■■■■ 103.4
SF3B1O75533 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.41e-8■■■■■ 103.4
SF3B1O75533 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.396e-6■■■■■ 103.4
SF3B1O75533 MAPKAP1-211ENST00000433483 769 ntTSL 523.73■■□□□ 1.396e-6■■■■■ 103.4
SF3B1O75533 PKN1-210ENST00000587429 562 ntTSL 423.71■■□□□ 1.396e-6■■■■■ 103.4
SF3B1O75533 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC23.69■■□□□ 1.386e-6■■■■■ 103.4
SF3B1O75533 JMJD8-210ENST00000567901 785 ntTSL 323.67■■□□□ 1.386e-6■■■■■ 103.4
SF3B1O75533 RMND5B-203ENST00000507457 808 ntTSL 223.64■■□□□ 1.386e-6■■■■■ 103.4
SF3B1O75533 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.61■■□□□ 1.373e-6■■■■■ 103.4
SF3B1O75533 UBE2J2-209ENST00000461142 837 ntTSL 323.57■■□□□ 1.366e-6■■■■■ 103.4
SF3B1O75533 MACF1-211ENST00000467673 792 ntTSL 323.49■■□□□ 1.351e-6■■■■■ 103.4
SF3B1O75533 TBC1D20-203ENST00000461304 2024 ntTSL 1 (best)23.42■■□□□ 1.341e-8■■■■■ 103.4
SF3B1O75533 ASS1-205ENST00000422569 807 ntTSL 523.39■■□□□ 1.346e-6■■■■■ 103.4
SF3B1O75533 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.39■■□□□ 1.335e-6■■■■■ 103.4
SF3B1O75533 EHMT1-209ENST00000475704 756 ntTSL 223.34■■□□□ 1.336e-6■■■■■ 103.4
SF3B1O75533 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.336e-6■■■■■ 103.4
SF3B1O75533 JMJD8-207ENST00000565302 1975 ntTSL 323.31■■□□□ 1.326e-6■■■■■ 103.4
SF3B1O75533 EMID1-205ENST00000430127 641 ntTSL 523.25■■□□□ 1.311e-8■■■■■ 103.4
SF3B1O75533 POLR2E-205ENST00000586817 2441 ntTSL 223.2■■□□□ 1.33e-6■■■■■ 103.4
SF3B1O75533 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.31e-8■■■■■ 103.4
SF3B1O75533 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.291e-8■■■■■ 103.4
SF3B1O75533 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.09■■□□□ 1.292e-6■■■■■ 103.4
SF3B1O75533 UBE2J2-219ENST00000503294 814 ntTSL 423.08■■□□□ 1.284e-6■■■■■ 103.4
SF3B1O75533 UBE2J2-206ENST00000422076 643 ntTSL 523.08■■□□□ 1.284e-6■■■■■ 103.4
SF3B1O75533 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.286e-6■■■■■ 103.4
SF3B1O75533 QKI-204ENST00000361758 6085 ntTSL 522.98■■□□□ 1.275e-6■■■■■ 103.4
SF3B1O75533 GRK2-207ENST00000529738 500 ntTSL 222.96■■□□□ 1.271e-6■■■■■ 103.4
SF3B1O75533 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.95■■□□□ 1.266e-6■■■■■ 103.4
SF3B1O75533 RENBP-203ENST00000423624 1304 ntTSL 522.94■■□□□ 1.266e-6■■■■■ 103.4
SF3B1O75533 SHCBP1-205ENST00000566016 1482 ntTSL 1 (best)22.88■■□□□ 1.256e-6■■■■■ 103.4
SF3B1O75533 MAPKAP1-210ENST00000427078 816 ntTSL 522.83■■□□□ 1.256e-6■■■■■ 103.4
SF3B1O75533 C15orf61-203ENST00000560041 744 ntTSL 322.82■■□□□ 1.241e-8■■■■■ 103.4
SF3B1O75533 NAA20-201ENST00000310450 920 ntTSL 2 BASIC22.76■■□□□ 1.231e-8■■■■■ 103.4
SF3B1O75533 NAA20-207ENST00000484480 1222 ntTSL 522.76■■□□□ 1.231e-8■■■■■ 103.4
SF3B1O75533 GORASP1-216ENST00000470910 1005 ntTSL 222.73■■□□□ 1.236e-6■■■■■ 103.4
SF3B1O75533 FAM135A-212ENST00000507085 641 ntTSL 322.63■■□□□ 1.211e-8■■■■■ 103.4
SF3B1O75533 PDLIM1-202ENST00000477757 850 ntTSL 222.57■■□□□ 1.21e-8■■■■■ 103.4
SF3B1O75533 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.57■■□□□ 1.21e-8■■■■■ 103.4
SF3B1O75533 PPP4C-207ENST00000563732 846 ntTSL 222.56■■□□□ 1.26e-6■■■■■ 103.4
SF3B1O75533 GORASP1-222ENST00000488479 539 ntTSL 422.56■■□□□ 1.26e-6■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1270.1 ms