Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 CICP6-201ENST00000457191 2729 ntBASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAIPQ9BWF2 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 AL662844.4-201ENST00000606367 2838 ntBASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 FO393414.2-201ENST00000405153 598 ntBASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 COX5BP8-201ENST00000416911 349 ntBASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 MIR6069-201ENST00000620069 79 ntBASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 AL513523.2-202ENST00000427283 2040 ntBASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAIPQ9BWF2 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 AC007541.1-201ENST00000570282 1469 ntBASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 AC093004.1-201ENST00000508850 424 ntBASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 AC044860.1-202ENST00000559481 777 ntBASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 AL132655.2-201ENST00000596276 594 ntBASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 AL162727.3-201ENST00000635661 2787 ntBASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TRAIPQ9BWF2 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
TRAIPQ9BWF2 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAIPQ9BWF2 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms