Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RFX3P48380 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.2■□□□□ 0.02
RFX3P48380 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
RFX3P48380 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
RFX3P48380 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
RFX3P48380 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC15.2■□□□□ 0.02
RFX3P48380 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX3P48380 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX3P48380 AC073439.1-201ENST00000624121 1774 ntBASIC15.19■□□□□ 0.02
RFX3P48380 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RFX3P48380 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.19■□□□□ 0.02
RFX3P48380 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 AL355306.1-201ENST00000415580 579 ntBASIC15.19■□□□□ 0.02
RFX3P48380 BX842568.4-201ENST00000421222 227 ntBASIC15.19■□□□□ 0.02
RFX3P48380 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 TIMM8BP1-201ENST00000452384 211 ntBASIC15.19■□□□□ 0.02
RFX3P48380 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.19■□□□□ 0.02
RFX3P48380 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.19■□□□□ 0.02
RFX3P48380 AL135744.1-201ENST00000565098 629 ntBASIC15.19■□□□□ 0.02
RFX3P48380 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.19■□□□□ 0.02
RFX3P48380 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RFX3P48380 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC15.19■□□□□ 0.02
RFX3P48380 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 AC092902.6-201ENST00000641783 218 ntBASIC15.19■□□□□ 0.02
RFX3P48380 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
RFX3P48380 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.19■□□□□ 0.02
RFX3P48380 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.19■□□□□ 0.02
RFX3P48380 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
RFX3P48380 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
RFX3P48380 U82695.1-201ENST00000635752 1889 ntBASIC15.18■□□□□ 0.02
RFX3P48380 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX3P48380 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX3P48380 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 TFAMP1-201ENST00000412727 736 ntBASIC15.18■□□□□ 0.02
RFX3P48380 HTR5BP-201ENST00000430851 1154 ntBASIC15.18■□□□□ 0.02
RFX3P48380 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX3P48380 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX3P48380 CEND1P1-201ENST00000451006 455 ntBASIC15.18■□□□□ 0.02
RFX3P48380 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 PRYP6-201ENST00000514804 343 ntBASIC15.18■□□□□ 0.02
RFX3P48380 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.18■□□□□ 0.02
RFX3P48380 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.18■□□□□ 0.02
RFX3P48380 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
RFX3P48380 C20orf181-201ENST00000623918 480 ntBASIC15.18■□□□□ 0.02
RFX3P48380 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.18■□□□□ 0.02
RFX3P48380 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 MYO15B-237ENST00000642007 4893 ntBASIC15.18■□□□□ 0.02
RFX3P48380 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.18■□□□□ 0.02
RFX3P48380 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
RFX3P48380 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
RFX3P48380 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms