Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ABBA01031661.1-201ENST00000634362 1253 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AGAP7P-201ENST00000582299 2062 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AGAP14-201ENST00000624701 2060 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 FGD5P1-202ENST00000614866 2498 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 KRT8P39-201ENST00000396270 1433 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 GPAA1P2-202ENST00000606848 1787 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AL359183.1-201ENST00000623796 2132 ntBASIC12.17□□□□□ -0.46
HLA-DQA1P01909 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 FAM8A6P-201ENST00000407496 1135 ntBASIC12.17□□□□□ -0.46
HLA-DQA1P01909 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AC010654.1-201ENST00000615722 808 ntBASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AC011558.1-201ENST00000623459 338 ntBASIC12.17□□□□□ -0.46
HLA-DQA1P01909 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AC091951.1-201ENST00000512854 2465 ntBASIC12.17□□□□□ -0.46
HLA-DQA1P01909 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 AC008677.1-201ENST00000519230 1561 ntBASIC12.17□□□□□ -0.46
HLA-DQA1P01909 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 OS9-204ENST00000389146 2091 ntTSL 2 BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
HLA-DQA1P01909 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ABR-205ENST00000544583 5595 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
HLA-DQA1P01909 RNF152P1-201ENST00000397754 604 ntBASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms