Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 AC069224.1-201ENST00000566372 1715 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 AC232323.1-201ENST00000540724 2099 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 REXO1L5P-201ENST00000622260 2098 ntBASIC14.32□□□□□ -0.12
MMP28Q9H239 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
MMP28Q9H239 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
MMP28Q9H239 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 PTENP1-202ENST00000532280 3996 ntBASIC14.31□□□□□ -0.12
MMP28Q9H239 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC14.31□□□□□ -0.12
MMP28Q9H239 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.31□□□□□ -0.12
MMP28Q9H239 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.31□□□□□ -0.12
MMP28Q9H239 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 AC138894.3-201ENST00000603787 634 ntBASIC14.31□□□□□ -0.12
MMP28Q9H239 IFNL4P1-201ENST00000607083 540 ntBASIC14.31□□□□□ -0.12
MMP28Q9H239 AL732292.2-201ENST00000609649 430 ntBASIC14.31□□□□□ -0.12
MMP28Q9H239 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 AL671710.1-201ENST00000610245 2349 ntBASIC14.31□□□□□ -0.12
MMP28Q9H239 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.31□□□□□ -0.12
MMP28Q9H239 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
MMP28Q9H239 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
MMP28Q9H239 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 AC107918.4-201ENST00000641966 3141 ntBASIC14.3□□□□□ -0.12
MMP28Q9H239 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.3□□□□□ -0.12
MMP28Q9H239 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
MMP28Q9H239 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.3□□□□□ -0.12
MMP28Q9H239 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.3□□□□□ -0.12
MMP28Q9H239 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
MMP28Q9H239 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.3□□□□□ -0.12
MMP28Q9H239 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
MMP28Q9H239 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.3□□□□□ -0.12
MMP28Q9H239 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
MMP28Q9H239 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms