Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.87■□□□□ 0.61
MRE11P49959 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.87■□□□□ 0.61
MRE11P49959 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
MRE11P49959 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 MIR770-201ENST00000390219 98 ntBASIC18.87■□□□□ 0.61
MRE11P49959 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.87■□□□□ 0.61
MRE11P49959 AC007967.3-201ENST00000434308 558 ntBASIC18.87■□□□□ 0.61
MRE11P49959 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
MRE11P49959 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.87■□□□□ 0.61
MRE11P49959 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.87■□□□□ 0.61
MRE11P49959 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC18.87■□□□□ 0.61
MRE11P49959 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.87■□□□□ 0.61
MRE11P49959 AC005912.2-201ENST00000619492 2400 ntBASIC18.87■□□□□ 0.61
MRE11P49959 MIR1199-201ENST00000621445 119 ntBASIC18.87■□□□□ 0.61
MRE11P49959 CICP14-201ENST00000629111 2732 ntBASIC18.87■□□□□ 0.61
MRE11P49959 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MRE11P49959 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC18.87■□□□□ 0.61
MRE11P49959 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.86■□□□□ 0.61
MRE11P49959 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.86■□□□□ 0.61
MRE11P49959 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.86■□□□□ 0.61
MRE11P49959 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
MRE11P49959 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 KRT8P49-201ENST00000604166 1432 ntBASIC18.86■□□□□ 0.61
MRE11P49959 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.86■□□□□ 0.61
MRE11P49959 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.86■□□□□ 0.61
MRE11P49959 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
MRE11P49959 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.86■□□□□ 0.61
MRE11P49959 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.86■□□□□ 0.61
MRE11P49959 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MRE11P49959 AC087481.3-201ENST00000602886 1894 ntBASIC18.86■□□□□ 0.61
MRE11P49959 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
MRE11P49959 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.86■□□□□ 0.61
MRE11P49959 AL512652.2-201ENST00000625156 1716 ntBASIC18.86■□□□□ 0.61
MRE11P49959 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
MRE11P49959 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC18.85■□□□□ 0.61
MRE11P49959 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.85■□□□□ 0.61
MRE11P49959 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.85■□□□□ 0.61
MRE11P49959 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.85■□□□□ 0.61
MRE11P49959 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC18.85■□□□□ 0.61
MRE11P49959 AL031731.1-201ENST00000642131 2094 ntBASIC18.85■□□□□ 0.61
MRE11P49959 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC18.85■□□□□ 0.61
MRE11P49959 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.85■□□□□ 0.61
MRE11P49959 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC18.85■□□□□ 0.61
MRE11P49959 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.85■□□□□ 0.61
MRE11P49959 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.85■□□□□ 0.61
MRE11P49959 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
MRE11P49959 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.85■□□□□ 0.61
MRE11P49959 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC18.85■□□□□ 0.61
MRE11P49959 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
MRE11P49959 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MRE11P49959 AL391807.1-203ENST00000604392 2365 ntBASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms