Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
MSH3P20585 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
MSH3P20585 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.07■□□□□ 0.16
MSH3P20585 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.07■□□□□ 0.16
MSH3P20585 SPDYE7P-202ENST00000420373 878 ntBASIC16.07■□□□□ 0.16
MSH3P20585 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.07■□□□□ 0.16
MSH3P20585 METTL21AP1-201ENST00000438852 635 ntBASIC16.07■□□□□ 0.16
MSH3P20585 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 AC025678.2-201ENST00000562061 970 ntBASIC16.07■□□□□ 0.16
MSH3P20585 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.07■□□□□ 0.16
MSH3P20585 AC061975.2-201ENST00000581722 295 ntBASIC16.07■□□□□ 0.16
MSH3P20585 AC018529.1-201ENST00000613063 361 ntBASIC16.07■□□□□ 0.16
MSH3P20585 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.07■□□□□ 0.16
MSH3P20585 KRT18P28-201ENST00000453838 1332 ntBASIC16.07■□□□□ 0.16
MSH3P20585 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.07■□□□□ 0.16
MSH3P20585 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSH3P20585 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.07■□□□□ 0.16
MSH3P20585 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
MSH3P20585 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.06■□□□□ 0.16
MSH3P20585 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
MSH3P20585 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.06■□□□□ 0.16
MSH3P20585 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
MSH3P20585 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.06■□□□□ 0.16
MSH3P20585 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 AL139400.1-201ENST00000366220 510 ntBASIC16.06■□□□□ 0.16
MSH3P20585 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.06■□□□□ 0.16
MSH3P20585 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
MSH3P20585 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
MSH3P20585 AL353705.2-201ENST00000428243 662 ntBASIC16.06■□□□□ 0.16
MSH3P20585 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.06■□□□□ 0.16
MSH3P20585 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 AC109322.1-201ENST00000524499 1264 ntBASIC16.06■□□□□ 0.16
MSH3P20585 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.06■□□□□ 0.16
MSH3P20585 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.06■□□□□ 0.16
MSH3P20585 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
MSH3P20585 AC003101.2-201ENST00000612557 442 ntBASIC16.06■□□□□ 0.16
MSH3P20585 MIR6080-201ENST00000617359 66 ntBASIC16.06■□□□□ 0.16
MSH3P20585 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
MSH3P20585 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
MSH3P20585 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
MSH3P20585 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSH3P20585 AC063926.3-201ENST00000624734 5658 ntBASIC16.05■□□□□ 0.16
MSH3P20585 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
MSH3P20585 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
MSH3P20585 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
MSH3P20585 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.05■□□□□ 0.16
MSH3P20585 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.05■□□□□ 0.16
MSH3P20585 AC245100.5-201ENST00000452108 331 ntBASIC16.05■□□□□ 0.16
MSH3P20585 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.05■□□□□ 0.16
MSH3P20585 AL512356.2-201ENST00000546955 174 ntBASIC16.05■□□□□ 0.16
MSH3P20585 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms