Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AP002414.1-201ENST00000391405 1147 ntBASIC12.19□□□□□ -0.46
HLA-DQA1P01909 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AL441883.1-201ENST00000566170 1045 ntBASIC12.19□□□□□ -0.46
HLA-DQA1P01909 RN7SL850P-201ENST00000579959 291 ntBASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 BEND3P1-201ENST00000421591 1944 ntBASIC12.19□□□□□ -0.46
HLA-DQA1P01909 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC015656.1-201ENST00000624209 3578 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 SNX33P1-201ENST00000592116 1762 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 TMPOP1-202ENST00000424642 1267 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC117947.1-201ENST00000427448 529 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 RASA4DP-201ENST00000460726 1199 ntBASIC12.18□□□□□ -0.46
HLA-DQA1P01909 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 CD81-212ENST00000526072 1172 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC12.18□□□□□ -0.46
HLA-DQA1P01909 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms