Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP29Q9HBJ7 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USP29Q9HBJ7 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
USP29Q9HBJ7 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.62■□□□□ 0.25
USP29Q9HBJ7 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USP29Q9HBJ7 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 RARRES2P8-201ENST00000566335 367 ntBASIC16.61■□□□□ 0.25
USP29Q9HBJ7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.61■□□□□ 0.25
USP29Q9HBJ7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
USP29Q9HBJ7 AC011477.6-201ENST00000604980 1927 ntBASIC16.6■□□□□ 0.25
USP29Q9HBJ7 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 RN7SL589P-201ENST00000481268 310 ntBASIC16.6■□□□□ 0.25
USP29Q9HBJ7 AC067863.1-201ENST00000494933 530 ntBASIC16.6■□□□□ 0.25
USP29Q9HBJ7 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 SPCS2P1-201ENST00000561636 679 ntBASIC16.6■□□□□ 0.25
USP29Q9HBJ7 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 AC015911.4-201ENST00000588022 1070 ntBASIC16.6■□□□□ 0.25
USP29Q9HBJ7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 AC026120.1-201ENST00000611536 926 ntBASIC16.6■□□□□ 0.25
USP29Q9HBJ7 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 AKAP8P1-201ENST00000434743 1349 ntBASIC16.6■□□□□ 0.25
USP29Q9HBJ7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USP29Q9HBJ7 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USP29Q9HBJ7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms