Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 AKAP13-202ENST00000394510 9128 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 CACNA1G-207ENST00000429973 7120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 TNRC18P2-201ENST00000417666 2714 ntBASIC12.28□□□□□ -0.44
AP1S3Q96PC3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
AP1S3Q96PC3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 FOS-208ENST00000555686 1496 ntTSL 2 BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
AP1S3Q96PC3 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 SIGLEC30P-201ENST00000455569 941 ntBASIC12.27□□□□□ -0.45
AP1S3Q96PC3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 GRK6P1-201ENST00000400595 1711 ntBASIC12.27□□□□□ -0.45
AP1S3Q96PC3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 LCA5-202ENST00000392959 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 GCK-202ENST00000345378 2421 ntTSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
AP1S3Q96PC3 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.26□□□□□ -0.45
AP1S3Q96PC3 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC12.26□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms