Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 HYMAI-201ENST00000635591 3347 ntBASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 AC003101.2-201ENST00000612557 442 ntBASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP4CQ96CF2 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4CQ96CF2 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 TREML5P-201ENST00000421694 576 ntBASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 AP3S2-216ENST00000617003 1561 ntBASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP4CQ96CF2 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 FO538757.1-201ENST00000623083 1397 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 MIR346-201ENST00000362234 95 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 MIR943-201ENST00000401286 94 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 AC125807.1-201ENST00000483097 614 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 AC093214.1-201ENST00000511688 1107 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 AC069262.1-201ENST00000539058 672 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 KRT8P23-201ENST00000560090 1207 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CHMP4CQ96CF2 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms