Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HDDC3Q8N4P3 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HDDC3Q8N4P3 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HDDC3Q8N4P3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 FLJ38576-201ENST00000623820 2459 ntBASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
HDDC3Q8N4P3 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 ALOX12P2-203ENST00000570921 1945 ntBASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 FO393414.2-201ENST00000405153 598 ntBASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 AC007431.3-201ENST00000623221 587 ntBASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 REXO1L8P-201ENST00000604378 1897 ntBASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HDDC3Q8N4P3 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 AC009053.2-201ENST00000563701 2365 ntBASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 AC245100.3-201ENST00000441281 285 ntBASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HDDC3Q8N4P3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms