Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HOXA1P49639 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
HOXA1P49639 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC13.5□□□□□ -0.25
HOXA1P49639 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.5□□□□□ -0.25
HOXA1P49639 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC13.5□□□□□ -0.25
HOXA1P49639 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
HOXA1P49639 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.5□□□□□ -0.25
HOXA1P49639 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HOXA1P49639 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXA1P49639 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HOXA1P49639 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXA1P49639 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
HOXA1P49639 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXA1P49639 AC026396.1-201ENST00000419388 421 ntBASIC13.49□□□□□ -0.25
HOXA1P49639 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXA1P49639 PTK2-216ENST00000519881 863 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXA1P49639 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.49□□□□□ -0.25
HOXA1P49639 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.49□□□□□ -0.25
HOXA1P49639 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 AC006277.1-201ENST00000624348 1610 ntBASIC13.49□□□□□ -0.25
HOXA1P49639 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.49□□□□□ -0.25
HOXA1P49639 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.49□□□□□ -0.25
HOXA1P49639 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HOXA1P49639 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HOXA1P49639 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 SIGLEC16-201ENST00000599858 1437 ntBASIC13.48□□□□□ -0.25
HOXA1P49639 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.48□□□□□ -0.25
HOXA1P49639 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 AL139385.1-201ENST00000611744 3272 ntBASIC13.48□□□□□ -0.25
HOXA1P49639 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC13.48□□□□□ -0.25
HOXA1P49639 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXA1P49639 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.48□□□□□ -0.25
HOXA1P49639 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXA1P49639 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC13.48□□□□□ -0.25
HOXA1P49639 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms