Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SNCAP37840 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SNCAP37840 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC13.36□□□□□ -0.27
SNCAP37840 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SNCAP37840 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SNCAP37840 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SNCAP37840 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.36□□□□□ -0.27
SNCAP37840 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
SNCAP37840 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SNCAP37840 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13.36□□□□□ -0.27
SNCAP37840 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.36□□□□□ -0.27
SNCAP37840 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SNCAP37840 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SNCAP37840 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC13.35□□□□□ -0.27
SNCAP37840 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
SNCAP37840 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 RBM17P3-201ENST00000417687 1192 ntBASIC13.35□□□□□ -0.27
SNCAP37840 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 ATP5G2P1-201ENST00000433580 426 ntBASIC13.35□□□□□ -0.27
SNCAP37840 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC13.35□□□□□ -0.27
SNCAP37840 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.35□□□□□ -0.27
SNCAP37840 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.35□□□□□ -0.27
SNCAP37840 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 AC064862.7-201ENST00000604520 867 ntBASIC13.35□□□□□ -0.27
SNCAP37840 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC13.35□□□□□ -0.27
SNCAP37840 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.35□□□□□ -0.27
SNCAP37840 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 CDC14C-201ENST00000428251 1719 ntBASIC13.35□□□□□ -0.27
SNCAP37840 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.35□□□□□ -0.27
SNCAP37840 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.27
SNCAP37840 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.35□□□□□ -0.27
SNCAP37840 AC139749.1-202ENST00000617529 3139 ntBASIC13.35□□□□□ -0.27
SNCAP37840 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
SNCAP37840 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
SNCAP37840 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.34□□□□□ -0.27
SNCAP37840 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.34□□□□□ -0.27
SNCAP37840 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.34□□□□□ -0.27
SNCAP37840 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 AL109954.1-202ENST00000564051 2148 ntBASIC13.34□□□□□ -0.27
SNCAP37840 C8orf49-201ENST00000525043 1968 ntBASIC13.34□□□□□ -0.27
SNCAP37840 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.34□□□□□ -0.27
SNCAP37840 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.34□□□□□ -0.27
SNCAP37840 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
SNCAP37840 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
SNCAP37840 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.34□□□□□ -0.27
SNCAP37840 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
SNCAP37840 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms