Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HOXD4P09016 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXD4P09016 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXD4P09016 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HOXD4P09016 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXD4P09016 AC009118.2-201ENST00000613275 655 ntBASIC14.68□□□□□ -0.06
HOXD4P09016 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.68□□□□□ -0.06
HOXD4P09016 AL590560.3-201ENST00000623350 461 ntBASIC14.68□□□□□ -0.06
HOXD4P09016 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXD4P09016 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 CICP13-201ENST00000422015 2789 ntBASIC14.68□□□□□ -0.06
HOXD4P09016 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HOXD4P09016 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.68□□□□□ -0.06
HOXD4P09016 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HOXD4P09016 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
HOXD4P09016 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HOXD4P09016 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
HOXD4P09016 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.68□□□□□ -0.06
HOXD4P09016 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXD4P09016 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXD4P09016 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
HOXD4P09016 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.67□□□□□ -0.06
HOXD4P09016 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXD4P09016 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.67□□□□□ -0.06
HOXD4P09016 CCDC74BP1-201ENST00000508880 1123 ntBASIC14.67□□□□□ -0.06
HOXD4P09016 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.67□□□□□ -0.06
HOXD4P09016 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.67□□□□□ -0.06
HOXD4P09016 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HOXD4P09016 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 CETN4P-206ENST00000642099 2168 ntBASIC14.67□□□□□ -0.06
HOXD4P09016 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HOXD4P09016 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
HOXD4P09016 AC100757.3-201ENST00000622361 1406 ntBASIC14.66□□□□□ -0.06
HOXD4P09016 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXD4P09016 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC14.66□□□□□ -0.06
HOXD4P09016 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXD4P09016 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.66□□□□□ -0.06
HOXD4P09016 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 CICP4-201ENST00000447359 2812 ntBASIC14.66□□□□□ -0.06
HOXD4P09016 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXD4P09016 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXD4P09016 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 AL391256.1-201ENST00000443260 1855 ntBASIC14.66□□□□□ -0.06
HOXD4P09016 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
HOXD4P09016 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXD4P09016 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HOXD4P09016 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.66□□□□□ -0.06
HOXD4P09016 CRB3P1-201ENST00000449338 276 ntBASIC14.66□□□□□ -0.06
HOXD4P09016 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.66□□□□□ -0.06
HOXD4P09016 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HOXD4P09016 AC004890.2-204ENST00000481968 304 ntBASIC14.66□□□□□ -0.06
HOXD4P09016 RNA5SP410-201ENST00000516285 106 ntBASIC14.66□□□□□ -0.06
HOXD4P09016 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.66□□□□□ -0.06
HOXD4P09016 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms