Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
HLA-DQA1P01909 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AC041040.2-201ENST00000622926 2899 ntBASIC12.2□□□□□ -0.46
HLA-DQA1P01909 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.2□□□□□ -0.46
HLA-DQA1P01909 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AK4P3-201ENST00000418260 669 ntBASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AL359075.1-203ENST00000462729 1002 ntBASIC12.2□□□□□ -0.46
HLA-DQA1P01909 YBX1P2-201ENST00000489612 999 ntBASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 KRT18P21-201ENST00000515767 1272 ntBASIC12.2□□□□□ -0.46
HLA-DQA1P01909 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 AL353593.2-201ENST00000602529 1483 ntBASIC12.2□□□□□ -0.46
HLA-DQA1P01909 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC12.2□□□□□ -0.46
HLA-DQA1P01909 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC12.19□□□□□ -0.46
HLA-DQA1P01909 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms