Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 AC145423.3-201ENST00000615987 467 ntBASIC13.85□□□□□ -0.19
COL12A1Q99715 AC127024.7-201ENST00000625101 200 ntBASIC13.85□□□□□ -0.19
COL12A1Q99715 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.85□□□□□ -0.19
COL12A1Q99715 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.85□□□□□ -0.19
COL12A1Q99715 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL12A1Q99715 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
COL12A1Q99715 KRT8P39-201ENST00000396270 1433 ntBASIC13.85□□□□□ -0.19
COL12A1Q99715 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
COL12A1Q99715 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 AC106794.1-201ENST00000506935 792 ntBASIC13.84□□□□□ -0.19
COL12A1Q99715 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC13.84□□□□□ -0.19
COL12A1Q99715 RNF146-211ENST00000609447 607 ntTSL 4 BASIC13.84□□□□□ -0.19
COL12A1Q99715 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.84□□□□□ -0.19
COL12A1Q99715 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL12A1Q99715 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
COL12A1Q99715 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 AC004899.1-201ENST00000424687 1714 ntBASIC13.84□□□□□ -0.19
COL12A1Q99715 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
COL12A1Q99715 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 AL603756.1-201ENST00000606511 2163 ntBASIC13.84□□□□□ -0.19
COL12A1Q99715 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 AL139008.1-201ENST00000437894 228 ntBASIC13.84□□□□□ -0.19
COL12A1Q99715 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC13.84□□□□□ -0.19
COL12A1Q99715 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.84□□□□□ -0.19
COL12A1Q99715 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.84□□□□□ -0.19
COL12A1Q99715 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.84□□□□□ -0.19
COL12A1Q99715 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
COL12A1Q99715 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL12A1Q99715 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL12A1Q99715 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC13.83□□□□□ -0.19
COL12A1Q99715 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
COL12A1Q99715 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
COL12A1Q99715 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
COL12A1Q99715 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
COL12A1Q99715 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC13.83□□□□□ -0.2
COL12A1Q99715 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
COL12A1Q99715 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms