Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
SCN1BQ07699 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.49□□□□□ -0.09
SCN1BQ07699 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.49□□□□□ -0.09
SCN1BQ07699 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.49□□□□□ -0.09
SCN1BQ07699 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.49□□□□□ -0.09
SCN1BQ07699 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
SCN1BQ07699 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC14.49□□□□□ -0.09
SCN1BQ07699 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SCN1BQ07699 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 AC020658.6-201ENST00000623564 1870 ntBASIC14.48□□□□□ -0.09
SCN1BQ07699 AL021920.2-201ENST00000624828 1351 ntBASIC14.48□□□□□ -0.09
SCN1BQ07699 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.48□□□□□ -0.09
SCN1BQ07699 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.48□□□□□ -0.09
SCN1BQ07699 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.48□□□□□ -0.09
SCN1BQ07699 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.48□□□□□ -0.09
SCN1BQ07699 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.48□□□□□ -0.09
SCN1BQ07699 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC14.48□□□□□ -0.09
SCN1BQ07699 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.48□□□□□ -0.09
SCN1BQ07699 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC14.48□□□□□ -0.09
SCN1BQ07699 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SCN1BQ07699 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
SCN1BQ07699 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.48□□□□□ -0.09
SCN1BQ07699 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SCN1BQ07699 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.47□□□□□ -0.09
SCN1BQ07699 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SCN1BQ07699 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.47□□□□□ -0.09
SCN1BQ07699 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 AC004817.3-201ENST00000602957 2129 ntBASIC14.47□□□□□ -0.09
SCN1BQ07699 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.47□□□□□ -0.09
SCN1BQ07699 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SCN1BQ07699 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.47□□□□□ -0.09
SCN1BQ07699 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.47□□□□□ -0.09
SCN1BQ07699 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.47□□□□□ -0.09
SCN1BQ07699 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
SCN1BQ07699 ATP5G2P1-201ENST00000433580 426 ntBASIC14.47□□□□□ -0.09
SCN1BQ07699 ABCD1P5-201ENST00000445663 754 ntBASIC14.47□□□□□ -0.09
SCN1BQ07699 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.47□□□□□ -0.09
SCN1BQ07699 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
SCN1BQ07699 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
SCN1BQ07699 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SCN1BQ07699 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms