Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 KRT19P2-202ENST00000557173 1012 ntBASIC15.59■□□□□ 0.09
SLC28A1O00337 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.59■□□□□ 0.09
SLC28A1O00337 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
SLC28A1O00337 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC15.59■□□□□ 0.09
SLC28A1O00337 AC064836.3-201ENST00000607928 673 ntBASIC15.59■□□□□ 0.09
SLC28A1O00337 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SLC28A1O00337 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.59■□□□□ 0.09
SLC28A1O00337 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SLC28A1O00337 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.59■□□□□ 0.09
SLC28A1O00337 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.09
SLC28A1O00337 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
SLC28A1O00337 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SLC28A1O00337 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
SLC28A1O00337 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SLC28A1O00337 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.58■□□□□ 0.09
SLC28A1O00337 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.58■□□□□ 0.09
SLC28A1O00337 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
SLC28A1O00337 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.58■□□□□ 0.08
SLC28A1O00337 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.58■□□□□ 0.08
SLC28A1O00337 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.58■□□□□ 0.08
SLC28A1O00337 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.58■□□□□ 0.08
SLC28A1O00337 AC145285.3-201ENST00000564603 959 ntBASIC15.58■□□□□ 0.08
SLC28A1O00337 AC018845.2-201ENST00000568326 409 ntBASIC15.58■□□□□ 0.08
SLC28A1O00337 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.58■□□□□ 0.08
SLC28A1O00337 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.58■□□□□ 0.08
SLC28A1O00337 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
SLC28A1O00337 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 HLA-A-201ENST00000376802 1334 ntBASIC15.58■□□□□ 0.08
SLC28A1O00337 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.58■□□□□ 0.08
SLC28A1O00337 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SLC28A1O00337 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SLC28A1O00337 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
SLC28A1O00337 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.57■□□□□ 0.08
SLC28A1O00337 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
SLC28A1O00337 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.57■□□□□ 0.08
SLC28A1O00337 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
SLC28A1O00337 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.57■□□□□ 0.08
SLC28A1O00337 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SLC28A1O00337 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms