Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 FAM86C2P-203ENST00000528684 1004 ntBASIC16.67■□□□□ 0.26
USP29Q9HBJ7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 AC025678.2-201ENST00000562061 970 ntBASIC16.67■□□□□ 0.26
USP29Q9HBJ7 AL138918.1-201ENST00000568306 659 ntBASIC16.67■□□□□ 0.26
USP29Q9HBJ7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
USP29Q9HBJ7 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 HAUS4P1-201ENST00000406739 1145 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 AC245100.5-201ENST00000452108 331 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 HLA-J-203ENST00000494367 1087 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 PRYP6-201ENST00000514804 343 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 AC004449.1-201ENST00000564240 433 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 AC106028.4-201ENST00000614509 607 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 PRAL-201ENST00000624952 3286 ntBASIC16.66■□□□□ 0.26
USP29Q9HBJ7 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
USP29Q9HBJ7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 AC004461.1-201ENST00000412461 403 ntBASIC16.65■□□□□ 0.26
USP29Q9HBJ7 FAM8A3P-201ENST00000427218 844 ntBASIC16.65■□□□□ 0.26
USP29Q9HBJ7 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 MIR4321-201ENST00000592276 80 ntBASIC16.65■□□□□ 0.26
USP29Q9HBJ7 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
USP29Q9HBJ7 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms