Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.38□□□□□ -0.11
VRK1Q99986 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VRK1Q99986 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VRK1Q99986 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.38□□□□□ -0.11
VRK1Q99986 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 AC099063.4-201ENST00000641099 1602 ntBASIC14.37□□□□□ -0.11
VRK1Q99986 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.37□□□□□ -0.11
VRK1Q99986 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VRK1Q99986 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
VRK1Q99986 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VRK1Q99986 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.37□□□□□ -0.11
VRK1Q99986 AL671277.1-201ENST00000429656 993 ntBASIC14.37□□□□□ -0.11
VRK1Q99986 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.37□□□□□ -0.11
VRK1Q99986 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC14.37□□□□□ -0.11
VRK1Q99986 AC004449.1-201ENST00000564240 433 ntBASIC14.37□□□□□ -0.11
VRK1Q99986 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.37□□□□□ -0.11
VRK1Q99986 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
VRK1Q99986 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.37□□□□□ -0.11
VRK1Q99986 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.37□□□□□ -0.11
VRK1Q99986 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
VRK1Q99986 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.37□□□□□ -0.11
VRK1Q99986 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
VRK1Q99986 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VRK1Q99986 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.36□□□□□ -0.11
VRK1Q99986 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC14.36□□□□□ -0.11
VRK1Q99986 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VRK1Q99986 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.36□□□□□ -0.11
VRK1Q99986 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VRK1Q99986 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VRK1Q99986 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
VRK1Q99986 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 AC140658.5-201ENST00000438532 169 ntBASIC14.36□□□□□ -0.11
VRK1Q99986 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.36□□□□□ -0.11
VRK1Q99986 SPDYE11-202ENST00000450699 704 ntBASIC14.36□□□□□ -0.11
VRK1Q99986 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.36□□□□□ -0.11
VRK1Q99986 AP002490.2-201ENST00000524791 560 ntBASIC14.36□□□□□ -0.11
VRK1Q99986 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.36□□□□□ -0.11
VRK1Q99986 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VRK1Q99986 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
VRK1Q99986 SPDYE9P-201ENST00000570642 692 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms