Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.85□□□□□ -0.03
RFC3P40938 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
RFC3P40938 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 MRPS18AP1-201ENST00000414458 589 ntBASIC14.85□□□□□ -0.03
RFC3P40938 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.85□□□□□ -0.03
RFC3P40938 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.85□□□□□ -0.03
RFC3P40938 SERBP1P5-201ENST00000510079 1181 ntBASIC14.85□□□□□ -0.03
RFC3P40938 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.85□□□□□ -0.03
RFC3P40938 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.85□□□□□ -0.03
RFC3P40938 AC008761.3-201ENST00000624803 892 ntBASIC14.85□□□□□ -0.03
RFC3P40938 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 AL589702.1-201ENST00000641229 1509 ntBASIC14.85□□□□□ -0.03
RFC3P40938 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.85□□□□□ -0.03
RFC3P40938 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC14.85□□□□□ -0.03
RFC3P40938 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 CES3-203ENST00000543856 3178 ntTSL 2 BASIC14.85□□□□□ -0.03
RFC3P40938 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RFC3P40938 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
RFC3P40938 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
RFC3P40938 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.84□□□□□ -0.03
RFC3P40938 CETN4P-206ENST00000642099 2168 ntBASIC14.84□□□□□ -0.03
RFC3P40938 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.84□□□□□ -0.03
RFC3P40938 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.84□□□□□ -0.03
RFC3P40938 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 RPL37AP1-201ENST00000412502 279 ntBASIC14.84□□□□□ -0.03
RFC3P40938 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.84□□□□□ -0.03
RFC3P40938 TSSK5P-201ENST00000423978 907 ntBASIC14.84□□□□□ -0.03
RFC3P40938 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.84□□□□□ -0.03
RFC3P40938 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.84□□□□□ -0.03
RFC3P40938 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.84□□□□□ -0.03
RFC3P40938 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.84□□□□□ -0.03
RFC3P40938 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.84□□□□□ -0.03
RFC3P40938 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
RFC3P40938 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.84□□□□□ -0.03
RFC3P40938 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
RFC3P40938 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RFC3P40938 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFC3P40938 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFC3P40938 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.83□□□□□ -0.03
RFC3P40938 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RFC3P40938 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.83□□□□□ -0.03
RFC3P40938 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms