Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCNAP12004 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCNAP12004 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCNAP12004 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC15.85■□□□□ 0.13
PCNAP12004 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.85■□□□□ 0.13
PCNAP12004 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PCNAP12004 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PCNAP12004 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.84■□□□□ 0.13
PCNAP12004 AC092850.2-201ENST00000623821 2697 ntBASIC15.84■□□□□ 0.13
PCNAP12004 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PCNAP12004 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
PCNAP12004 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
PCNAP12004 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.84■□□□□ 0.13
PCNAP12004 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.84■□□□□ 0.13
PCNAP12004 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 AC074386.1-202ENST00000463561 864 ntBASIC15.84■□□□□ 0.13
PCNAP12004 KRT18P34-201ENST00000488218 1270 ntBASIC15.84■□□□□ 0.13
PCNAP12004 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.84■□□□□ 0.13
PCNAP12004 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.84■□□□□ 0.13
PCNAP12004 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.84■□□□□ 0.13
PCNAP12004 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PCNAP12004 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PCNAP12004 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PCNAP12004 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PCNAP12004 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.83■□□□□ 0.13
PCNAP12004 AC016027.1-202ENST00000607927 1699 ntBASIC15.83■□□□□ 0.13
PCNAP12004 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.83■□□□□ 0.12
PCNAP12004 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.83■□□□□ 0.12
PCNAP12004 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.83■□□□□ 0.12
PCNAP12004 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.83■□□□□ 0.12
PCNAP12004 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.83■□□□□ 0.12
PCNAP12004 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.83■□□□□ 0.12
PCNAP12004 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.83■□□□□ 0.12
PCNAP12004 AC109635.5-201ENST00000533593 962 ntBASIC15.83■□□□□ 0.12
PCNAP12004 PDPK2P-202ENST00000562415 1191 ntBASIC15.83■□□□□ 0.12
PCNAP12004 FAM197Y3-203ENST00000618346 717 ntBASIC15.83■□□□□ 0.12
PCNAP12004 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.83■□□□□ 0.12
PCNAP12004 AC092865.6-201ENST00000642101 219 ntBASIC15.83■□□□□ 0.12
PCNAP12004 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
PCNAP12004 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.83■□□□□ 0.12
PCNAP12004 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 AC067930.6-201ENST00000623257 4947 ntBASIC15.83■□□□□ 0.12
PCNAP12004 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
PCNAP12004 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.83■□□□□ 0.12
PCNAP12004 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PCNAP12004 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.83■□□□□ 0.12
PCNAP12004 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
PCNAP12004 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 AC010491.1-201ENST00000563101 2797 ntBASIC15.82■□□□□ 0.12
PCNAP12004 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.82■□□□□ 0.12
PCNAP12004 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.82■□□□□ 0.12
PCNAP12004 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PCNAP12004 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms