Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC004835.2-201ENST00000603762 682 ntBASIC17.56■□□□□ 0.4
RNF40O75150 AL513210.1-201ENST00000629608 234 ntBASIC17.56■□□□□ 0.4
RNF40O75150 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RNF40O75150 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RNF40O75150 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF40O75150 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
RNF40O75150 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RNF40O75150 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.56■□□□□ 0.4
RNF40O75150 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF40O75150 AL645728.1-201ENST00000366221 2101 ntBASIC17.56■□□□□ 0.4
RNF40O75150 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 AL603832.2-201ENST00000566195 2125 ntBASIC17.56■□□□□ 0.4
RNF40O75150 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RNF40O75150 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RNF40O75150 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF40O75150 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
RNF40O75150 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RNF40O75150 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF40O75150 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
RNF40O75150 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF40O75150 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.55■□□□□ 0.4
RNF40O75150 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF40O75150 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.55■□□□□ 0.4
RNF40O75150 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF40O75150 AC004449.1-201ENST00000564240 433 ntBASIC17.55■□□□□ 0.4
RNF40O75150 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.55■□□□□ 0.4
RNF40O75150 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF40O75150 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RNF40O75150 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF40O75150 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
RNF40O75150 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF40O75150 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RNF40O75150 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF40O75150 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
RNF40O75150 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
RNF40O75150 AC004461.1-201ENST00000412461 403 ntBASIC17.54■□□□□ 0.4
RNF40O75150 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF40O75150 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
RNF40O75150 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF40O75150 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.54■□□□□ 0.4
RNF40O75150 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF40O75150 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RNF40O75150 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF40O75150 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF40O75150 AC006058.4-201ENST00000624016 1670 ntBASIC17.54■□□□□ 0.4
RNF40O75150 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF40O75150 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF40O75150 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF40O75150 EGFEM1P-202ENST00000431685 1563 ntBASIC17.53■□□□□ 0.4
RNF40O75150 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RNF40O75150 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
RNF40O75150 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RNF40O75150 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms